article Open AccessTop 1% cited
WGCNA: an R package for weighted correlation network analysis
BMC Bioinformatics · 2008 · Vol. 9(1) · pp. 559–559
Peter Langfelder✉(University of California, Los Angeles)Steve Horvath(University of California, Los Angeles)
Abstract
The WGCNA package provides R functions for weighted correlation network analysis, e.g. co-expression network analysis of gene expression data. The R package along with its source code and additional material are freely available at http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA.
Bioinformatics and Genomic NetworksGene expression and cancer classificationGene Regulatory Network AnalysisGene co-expression networkR packageComputer scienceSoftwareData miningCorrelationNetwork analysisComputational biologyDNA microarrayGene regulatory network
MeSH terms
AlgorithmsAnimalsComputer GraphicsComputing MethodologiesHumansPattern Recognition, AutomatedProgramming LanguagesSoftwareComputational BiologyOligonucleotide Array Sequence AnalysisGene Expression ProfilingDatabases, GeneticSystems BiologyMice
Citations
28,332
FWCI
13.24
field-weighted impact
References
49
Percentile
99%
vs. same field & year
Citations per year
Cited by
Overlapping community detection in networks
ACM Computing Surveys · 2013 · 903 citations
The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma
Cell Reports · 2018 · 773 citations
Molecular Signature of Subtypes of Non-Small-Cell Lung Cancer by Large-Scale Transcriptional Profiling: Identification of Key Modules and Genes by Weighted Gene Co-Expression Network Analysis (WGCNA)
Cancers · 2019 · 295 citations
iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data
BMC Bioinformatics · 2018 · 1,671 citations
Is My Network Module Preserved and Reproducible?
PLoS Computational Biology · 2011 · 1,066 citations
Adult mouse cortical cell taxonomy revealed by single cell transcriptomics
Nature Neuroscience · 2016 · 1,929 citations
Gut microbiota in human metabolic health and disease
Nature Reviews Microbiology · 2020 · 4,353 citations
Comparative Analysis of Proteome and Transcriptome Variation in Mouse
PLoS Genetics · 2011 · 640 citations
References
Geometric Interpretation of Gene Coexpression Network Analysis
PLoS Computational Biology · 2008 · 898 citations
Missing value estimation methods for DNA microarrays
Bioinformatics · 2001 · 4,180 citations
Gene Ontology: tool for the unification of biology
Nature Genetics · 2000 · 43,975 citations
Collective dynamics of ‘small-world’ networks
Nature · 1998 · 42,581 citations
DAVID: Database for Annotation, Visualization, and Integrated Discovery
Genome biology · 2003 · 9,433 citations
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
Genome Research · 2003 · 53,132 citations
Finding groups in data: an introduction to cluster analysis
Choice Reviews Online · 1991 · 10,616 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.