article Open AccessTop 1% cited
Wisdom of crowds for robust gene network inference
Nature Methods · 2012 · Vol. 9(8) · pp. 796–804
Daniel Marbach✉(Massachusetts Institute of Technology)James C. Costello(Howard Hughes Medical Institute)Robert Küffner(Ludwig-Maximilians-Universität München)Nic M. Vega(Boston University)Robert J. Prill(IBM Research - Thomas J. Watson Research Center)Diogo M. Camacho(Boston University)Kyle R. Allison(Howard Hughes Medical Institute)Manolis Kellis(Broad Institute)James J. Collins(Boston University)Gustavo Stolovitzky(IBM Research - Thomas J. Watson Research Center)
Bioinformatics and Genomic NetworksGene Regulatory Network AnalysisGene expression and cancer classificationInferenceComputer scienceGene regulatory networkData miningIn silicoComputational biologyMachine learningArtificial intelligenceBiologyGene
Funding
- National Science Foundation
- Agence Nationale de la Recherche
- Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
- Irish Research Council
- Fonds De La Recherche Scientifique - FNRS
- Fédération Wallonie-Bruxelles
- Fonds Wetenschappelijk Onderzoek
- Tel Aviv University
- Vlaamse regering
- Irish Centre for High-End Computing
- National Institutes of Health
- National Cancer Institute
Citations
1,752
FWCI
48.86
field-weighted impact
References
59
Percentile
100%
vs. same field & year
Citations per year
Cited by
Big Data Analytics in Healthcare
BioMed Research International · 2015 · 463 citations
Transcriptome-Based Network Analysis Reveals a Spectrum Model of Human Macrophage Activation
Immunity · 2014 · 2,133 citations
SCENIC: single-cell regulatory network inference and clustering
Nature Methods · 2017 · 6,605 citations
Benchmark and integration of resources for the estimation of human transcription factor activities
Genome Research · 2019 · 1,087 citations
Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition)
European Journal of Immunology · 2019 · 971 citations
References
An improved map of conserved regulatory sites for <it>Saccharomyces cerevisiae</it>
SHILAP Revista de lepidopterología · 2006 · 729 citations
GenePattern 2.0
Nature Genetics · 2006 · 2,105 citations
Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles
PLoS Biology · 2007 · 1,628 citations
Inferring Regulatory Networks from Expression Data Using Tree-Based Methods
PLoS ONE · 2010 · 2,212 citations
A comparison of normalization methods for high densityoligonucleotide array data based on variance and bias
Bioinformatics · 2003 · 8,399 citations
Regression Shrinkage and Selection Via the Lasso
Journal of the Royal Statistical Society Series B (Statistical Methodology) · 1996 · 50,746 citations
Model Selection and Estimation in Regression with Grouped Variables
Journal of the Royal Statistical Society Series B (Statistical Methodology) · 2005 · 7,370 citations
Modularity and community structure in networks
Proceedings of the National Academy of Sciences · 2006 · 12,046 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.