articleTop 1% cited
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
Nature Methods · 2013 · Vol. 10(6) · pp. 563–569
Chen-Shan Chin✉(Pacific Biosciences (United States))David H. Alexander(Pacific Biosciences (United States))Patrick Marks(Pacific Biosciences (United States))Aaron A. Klammer(Pacific Biosciences (United States))James Drake(Pacific Biosciences (United States))Cheryl Heiner(Pacific Biosciences (United States))Alicia Clum(Joint Genome Institute)Alex Copeland(Joint Genome Institute)John Huddleston(University of Washington)Evan E. Eichler(Seattle University)Stephen W. Turner(Pacific Biosciences (United States))Jonas Korlach(Pacific Biosciences (United States))
Genomics and Phylogenetic StudiesBacteriophages and microbial interactionsRNA and protein synthesis mechanismsSequence assemblySingle molecule real time sequencingHybrid genome assemblyGenomeShotgun sequencingComputational biologyIllumina dye sequencingDNA sequencingWhole genome sequencingReference genome
MeSH terms
Escherichia coliHumansRepetitive Sequences, Nucleic AcidGene LibraryGenome, BacterialSequence Analysis, DNAChromosomes, Artificial, Bacterial
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