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Geo Pertea

Johns Hopkins UniversityORCID https://orcid.org/0000-0002-3210-7182

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Impact (2-yr)

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Top Publications

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Nature Biotechnology201016,341 citations

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

Nature Biotechnology201514,980 citations

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Genome biology201313,586 citations

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Nature Protocols201212,813 citations

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Nature Protocols20167,457 citations

Transcriptome assembly from long-read RNA-seq alignments with StringTie2

Genome biology20192,037 citations

A whole-genome assembly of the domestic cow, Bos taurus

Genome biology20091,188 citations

Geo Pertea · Scinovex