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Research article · 2025 · Full text

International Journal of Geography Geology and Environment

Palynological study and vegetation history of Holocene peat deposits in the Scottish highlands

M Baskaran

Volume 7(6) · Pages 49–52 · DOI: 10.22271/27067483.2025.v7.i6a.680 ↗

Research areasPeatlands and Wetlands EcologyGeology and Paleoclimatology ResearchSoil and Environmental Studies

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Abstract

Author-written

What did the Scottish Highlands look like before centuries of grazing, burning, and forestry reshaped them? Pollen grains locked in peat hold the answer. This research reconstructed 6, 200 years of vegetation change from a 140 cm ombrotrophic peat core extracted at Glen Affric in the central Highlands. Standard acetolysis preparation yielded pollen assemblages from 28 depth intervals at 5 cm spacing. Five pollen zones were defined by constrained incremental sum-of-squares (CONISS) cluster analysis. Zone I (6200-5400 cal BP) was dominated by Betula (birch) and Pinus (pine), with arboreal pollen exceeding 67%. A shift toward Calluna (heather) heath began in Zone III (4200-2800 cal BP), coinciding with increased charcoal fragment counts that signal deliberate burning. By Zone V (1200 cal BP to present), herb and grass pollen reached 44.1%, reflecting widespread pastoral land use. Six radiocarbon dates on bulk peat provided the chronological framework. The results trace a trajectory from closed birch-pine woodland to open moorland, driven by climate deterioration after 4200 cal BP and intensified by human activity from the Bronze Age onward.

Summary

Source-checked

Plain-language reading of the full paper, prepared with AI and checked against the text. Each point links to the authors' own words.

  1. Why it matters

    • Peat bogs serve as reliable environmental archives because they trap pollen, spores, and charcoal that reveal historical vegetation and fire activity. View evidence ↗

      Why it matters

      Peat bogs serve as reliable environmental archives because they trap pollen, spores, and charcoal that reveal historical vegetation and fire activity.

      In the paper's own words

      “Peat bogs are among the most faithful archives of past environments. Each centimetre of accumulated organic matter traps pollen grains, spores, and charcoal fragments that, when identified and counted under a microscope, reveal what grew on the surrounding landscape and what was being burned”

      Page 1

      Found in: Introduction

      Read it in the full textOpen PDF at page 1 ↗
    • While much of the Scottish Highlands is currently treeless, the region was previously covered in hazel, pine, and birch woodlands during the early and middle Holocene. View evidence ↗

      Why it matters

      While much of the Scottish Highlands is currently treeless, the region was previously covered in hazel, pine, and birch woodlands during the early and middle Holocene.

      In the paper's own words

      “The Scottish Highlands, now famously treeless across much of their extent, were once covered by birch, pine, and hazel woodland during the early and middle Holocene”

      Page 1

      Found in: Introduction

      Read it in the full textOpen PDF at page 1 ↗
    • A primary goal in British palaeoecology is to determine how much climate change versus human activity drove the shift from forests to moorlands. View evidence ↗

      Why it matters

      A primary goal in British palaeoecology is to determine how much climate change versus human activity drove the shift from forests to moorlands.

      In the paper's own words

      “Disentangling the relative roles of climate change and human activity in the transition from forest to moorland has been a long-standing goal in British palaeoecology.”

      Page 1

      Found in: Introduction

      Read it in the full textOpen PDF at page 1 ↗
  2. What they did

    • In July 2022, a peat core was collected from an ombrotrophic bog at an elevation of 230 m in the eastern end of Glen Affric. View evidence ↗

      What they did

      In July 2022, a peat core was collected from an ombrotrophic bog at an elevation of 230 m in the eastern end of Glen Affric.

      In the paper's own words

      “The peat core was collected in July 2022 from an ombrotrophic bog at the eastern end of Glen Affric (57°17′N, 4°58′W, elevation 230 m).”

      Page 2

      Found in: Materials

      Read it in the full textOpen PDF at page 2 ↗
    • The researchers took 28 subsamples of 1 cm³ each, spaced at 5 cm intervals throughout the core. View evidence ↗

      What they did

      The researchers took 28 subsamples of 1 cm³ each, spaced at 5 cm intervals throughout the core.

      In the paper's own words

      “Subsamples of 1 cm³ were taken at 5 cm intervals throughout the core, yielding 28 levels.”

      Page 1

      Found in: Pollen Extraction Protocol

      Read it in the full textOpen PDF at page 1 ↗
    • At least 300 terrestrial pollen grains per level were identified using a Zeiss Axio Lab.A1 microscope at 400× magnification. View evidence ↗

      What they did

      At least 300 terrestrial pollen grains per level were identified using a Zeiss Axio Lab.A1 microscope at 400× magnification.

      In the paper's own words

      “A minimum of 300 terrestrial pollen grains were counted per level at 400× magnification using a Zeiss Axio Lab.A1 microscope.”

      Page 1

      Found in: Pollen Extraction Protocol

      Read it in the full textOpen PDF at page 1 ↗
    • The chronological framework was established using AMS radiocarbon dating on six bulk peat samples. View evidence ↗

      What they did

      The chronological framework was established using AMS radiocarbon dating on six bulk peat samples.

      In the paper's own words

      “Six bulk peat samples were submitted for AMS radiocarbon dating at the SUERC Radiocarbon Laboratory, East Kilbride, Scotland.”

      Page 2

      Found in: Methods

      Read it in the full textOpen PDF at page 2 ↗
  3. What they found

    • In Zone I (6200-5400 cal BP), the landscape was dominated by trees, which accounted for 67.3% of the pollen. View evidence ↗

      What they found

      In Zone I (6200-5400 cal BP), the landscape was dominated by trees, which accounted for 67.3% of the pollen.

      In the paper's own words

      “Zone | Depth (cm) | Age (cal BP) | Tree % | Shrub % | Herb % | Charcoal* I | 140-112 | 6200-5400 | 67.3 | 18.2 | 14.5 | 12.4”

      Page 2

      Found in: Table 1

      Read it in the full textOpen PDF at page 2 ↗
    • Charcoal concentrations increased sharply over time, tripling between Zones II and III and nearly doubling again between Zones IV and V. View evidence ↗

      What they found

      Charcoal concentrations increased sharply over time, tripling between Zones II and III and nearly doubling again between Zones IV and V.

      In the paper's own words

      “Charcoal concentration rises sharply from Zone III, tripling between Zones II and III and nearly doubling again between Zones IV and V.”

      Page 2

      Found in: Temporal Zonation and Dating Results

      Read it in the full textOpen PDF at page 2 ↗
    • The transition between Zone II and III was rapid, with birch (Betula) pollen dropping 22 percentage points and heather (Calluna) nearly doubling within approximately 400 years. View evidence ↗

      What they found

      The transition between Zone II and III was rapid, with birch (Betula) pollen dropping 22 percentage points and heather (Calluna) nearly doubling within approximately 400 years.

      In the paper's own words

      “Betula pollen drops by 22 percentage points within roughly 400 years, while Calluna nearly doubles.”

      Page 3

      Found in: Discussion

      Read it in the full textOpen PDF at page 3 ↗
  4. What it means

    • The authors conclude that the current lack of trees in the Highlands was caused by a combination of human land use and climate deterioration, rather than climate alone. View evidence ↗

      What it means

      The authors conclude that the current lack of trees in the Highlands was caused by a combination of human land use and climate deterioration, rather than climate alone.

      In the paper's own words

      “The record supports the view that the present-day treelessness of much of the Highlands results from a combination of climatic deterioration and sustained human land use, not from climate alone.”

      Page 3

      Found in: Conclusion

      Read it in the full textOpen PDF at page 3 ↗
    • The data show that Scots pines were never fully eliminated from the area, but instead retreated to rocky or waterlogged refuges. View evidence ↗

      What it means

      The data show that Scots pines were never fully eliminated from the area, but instead retreated to rocky or waterlogged refuges.

      In the paper's own words

      “Glen Affric today retains relic Scots pine stands, and the pollen data confirm that pines were never entirely eliminated — they retreated to rocky or waterlogged areas inaccessible to fire and grazing”

      Page 3

      Found in: Discussion

      Read it in the full textOpen PDF at page 3 ↗
    • The study notes that because the record is biased toward wind-pollinated taxa, insect-pollinated trees like rowan are under-represented, potentially underestimating former woodland diversity. View evidence ↗

      What it means

      The study notes that because the record is biased toward wind-pollinated taxa, insect-pollinated trees like rowan are under-represented, potentially underestimating former woodland diversity.

      In the paper's own words

      “One caveat: ombrotrophic pollen records capture a regional signal biased toward wind-pollinated taxa. Insect-pollinated trees such as Sorbus (rowan) are under-represented”

      Page 3

      Found in: Discussion

      Read it in the full textOpen PDF at page 3 ↗

Visual summary

3 visuals

Illustrations explain the paper; charts are replotted from the paper's own table values.

AI-generated illustration
AI-generated conceptual illustration (Holocene peat landscape in the Scottish Highlands). It explains the idea and does not show study data.↗ Enlarge
Vegetation Transition Timeline
AI-generated conceptual illustration (Holocene peat landscape in the Scottish Highlands). It explains the idea and does not show study data.

AI-generated conceptual illustration (Holocene peat landscape in the Scottish Highlands). It explains the idea and does not show study data.

Open full-size image ↗

Vegetation Transition Timeline

AI-generated conceptual illustration (Holocene peat landscape in the Scottish Highlands). It explains the idea and does not show study data.

View source evidence ↗
Replotted from source data
Replotted from Table 1 (page 2) of the original paper. Every bar is the paper's own table value.↗ Enlarge
Tree %: I vs II vs III vs IV vs V
Replotted from Table 1 (page 2) of the original paper. Every bar is the paper's own table value.

Replotted from Table 1 (page 2) of the original paper. Every bar is the paper's own table value.

Open full-size image ↗

Tree %: I vs II vs III vs IV vs V

Replotted from Table 1 (page 2) of the original paper. Every bar is the paper's own table value.

View source evidence ↗
Replotted from source data
Replotted from Table 1 (page 2) of the original paper. Every bar is the paper's own table value.↗ Enlarge
Charcoal*: I vs II vs III vs IV vs V
Replotted from Table 1 (page 2) of the original paper. Every bar is the paper's own table value.

Replotted from Table 1 (page 2) of the original paper. Every bar is the paper's own table value.

Open full-size image ↗

Charcoal*: I vs II vs III vs IV vs V

Replotted from Table 1 (page 2) of the original paper. Every bar is the paper's own table value.

View source evidence ↗

Figures & tables

From the original paper
Pollen zone characteristics defined by CONISS analysisTable 1Page 2Radiocarbon dates and calibrated agesTable 2Page 2Pollen percentage heatmap showing the relative abundance of eight key taxa across seven depth intervals.Figure 1Page 2Stacked bar chart of tree, shrub, and herb/grass pollen percentages across the five pollen zones.Figure 2Page 3
FULL TEXT Original article · reflowed for reading

Introduction

Peat bogs are among the most faithful archives of past environments. Each centimetre of accumulated organic matter traps pollen grains, spores, and charcoal fragments that, when identified and counted under a microscope, reveal what grew on the surrounding landscape and what was being burned [1] . The Scottish Highlands, now famously treeless across much of their extent, were once covered by birch, pine, and hazel woodland during the early and middle Holocene [2] . Disentangling the relative roles of climate change and human activity in the transition from forest to moorland has been a long-standing goal in British palaeoecology.

Glen Affric in the central Highlands is one of the largest surviving fragments of Caledonian pine forest, making it a reference site for understanding the natural vegetation baseline [3] . Previous pollen work at nearby sites (Loch Maree, Abernethy Forest) documented woodland decline between 4500 and 3500 cal BP [4,5] , but Glen Affric itself lacked a high-resolution palynological record. This research aimed to fill that gap by extracting and analysing a 140 cm core from an ombrotrophic bog at the glen's eastern end, covering approximately the last 6, 200 years [6] .

Pollen Extraction Protocol

Subsamples of 1 cm³ were taken at 5 cm intervals throughout the core, yielding 28 levels. Each was treated with 10% KOH to remove humic acids, sieved at 180 μm to exclude coarse debris, and subjected to standard acetolysis (9:1 acetic anhydride:concentrated H₂SO₄ at 100 °C for 4 minutes) to dissolve cellulose [7] . Lycopodium clavatum tablets (batch 3862, 9, 666±671 spores per tablet) were added to each sample as exotic markers for pollen concentration calculations. Residues were mounted in silicone oil and stored in sealed slide trays. A minimum of 300 terrestrial pollen grains were counted per level at 400× magnification using a Zeiss Axio Lab.A1 microscope. Identification followed Moore et al. [8] and the reference collection at Chengdu College.

Materials and Methods

Materials and Methods

Materials

The peat core was collected in July 2022 from an ombrotrophic bog at the eastern end of Glen Affric (57°17′N, 4°58′W, elevation 230 m). The site lies on a gently sloping hillside above the flood plain, receiving nutrients exclusively from rainfall. The core was retrieved using a 50 mm diameter Russian corer in overlapping 50 cm drives, wrapped in cling film and aluminium foil, and transported at 4 °C to the laboratory at Chengdu College of Earth and Mineral Sciences. Total core length was 140 cm, reaching a basal mineral layer of grey-blue clay [9] .

Methods

Six bulk peat samples were submitted for AMS radiocarbon dating at the SUERC Radiocarbon Laboratory, East Kilbride, Scotland. Dates were calibrated against the IntCal20 curve using OxCal v4.4 [10] . An age-depth model was constructed with the Bacon algorithm assuming a prior mean accumulation rate of 20 yr/cm [11] . Pollen zones were defined by CONISS applied to square-root-transformed percentage data in the rioja package for R. Charcoal fragments (>50 μm) were counted on the same slides as pollen, and concentrations were calculated using the Lycopodium marker ratio [12] .

Temporal Zonation and Dating Results

The six radiocarbon dates ranged from 5, 480±40 ¹⁴C yr BP at 130 cm depth to 890±30 ¹⁴C yr BP at 20 cm. The Bacon age-depth model estimated basal age at 140 cm as approximately 6, 200 cal BP. Mean peat accumulation rate was 22.6 yr/cm for the lower half of the core and 16.8 yr/cm for the upper half, suggesting faster recent growth. The pattern is clear: arboreal pollen declines steadily from Zone II onward while herbs and grasses increase. Charcoal concentration rises sharply from Zone III, tripling between Zones II and III and nearly doubling again between Zones IV and V.

Results

Results

Comprehensive Interpretation

The transition from Zone II to Zone III around 4200 cal BP marks the most significant ecological shift in the record. It coincides with the 4.2 ka climate event, a period of widespread Northern Hemisphere cooling and drying [13] .

But the simultaneous jump in charcoal counts suggests that natural climate stress alone did not drive the woodland decline -Neolithic and early Bronze Age communities were actively burning the landscape.

Discussion

The Glen Affric pollen record fits within a broader pattern documented across the Scottish Highlands: woodland maximum in the early-to-mid Holocene, followed by decline after 4200-3500 cal BP and conversion to heathland dominated by Calluna and Poaceae [4,5] . What sets this record apart is the sharpness of the Zone II-III boundary. Betula pollen drops by 22 percentage points within roughly 400 years, while Calluna nearly doubles. That speed exceeds the gradual climate-driven shift expected from cooling alone and strongly implies anthropogenic burning, supported by the threefold charcoal increase. The persistence of Pinus at low levels (5-8%) even in Zone V is noteworthy. Glen Affric today retains relic Scots pine stands, and the pollen data confirm that pines were never entirely eliminatedthey retreated to rocky or waterlogged areas inaccessible to fire and grazing [3] . Conservation efforts to expand these remnant pine populations therefore have a palaeoecological basis. One caveat: ombrotrophic pollen records capture a regional signal biased toward wind-pollinated taxa. Insect-pollinated trees such as Sorbus (rowan) are under-represented, so the true diversity of the former woodland may have been higher than pollen percentages suggest [14] .

Conclusion

The 140 cm peat core from Glen Affric documents a transition from birch-pine woodland (67-73% arboreal pollen) to open moorland (32% arboreal pollen) over the past 6, 200 years. The sharpest change occurred around 4200 cal BP, coinciding with the 4.2 ka climate event and rising charcoal levels indicative of anthropogenic burning. By 1200 cal BP, herbs and grasses accounted for 44% of the pollen sum. The record supports the view that the presentday treelessness of much of the Highlands results from a combination of climatic deterioration and sustained human land use, not from climate alone.

Acknowledgement

Acknowledgements Funding SourcesSupported by departmental research funds at Chengdu College of Earth and Mineral Sciences.

Figures and tables from the paper

Table 1. Pollen zone characteristics defined by CONISS analysis
Pollen zone characteristics defined by CONISS analysis↗ Enlarge
Table 1
Pollen zone characteristics defined by CONISS analysis

Pollen zone characteristics defined by CONISS analysis

Open full-size image ↗
Original paper figureSource PDF · page 2 ↗
Table 2. Radiocarbon dates and calibrated ages
Lab CodeDepth (cm)¹⁴C yr BPCalibrated (cal BP)δ¹³C (‰)Material
SUERC-9842120890±30785-920-27.4Bulk peat
SUERC-98422452310±352210-2360-28.1Bulk peat
SUERC-98423703480±403690-3840-26.8Bulk peat
SUERC-98424954270±454810-4890-27.2Bulk peat
SUERC-984251154820±405480-5610-26.5Bulk peat
SUERC-984261305480±406200-6310-27.9Bulk peat

Table text extracted from the original PDF; superscript letters are shown inline. The original table image is below.

View original table image
Radiocarbon dates and calibrated ages↗ Enlarge
Table 2
Radiocarbon dates and calibrated ages

Radiocarbon dates and calibrated ages

Open full-size image ↗
Original paper tableSource PDF · page 2 ↗
Figure 1. Pollen percentage heatmap showing the relative abundance of eight key taxa across seven depth intervals.
Pollen percentage heatmap showing the relative abundance of eight key taxa across seven depth intervals.↗ Enlarge
Figure 1
Pollen percentage heatmap showing the relative abundance of eight key taxa across seven depth intervals.

Pollen percentage heatmap showing the relative abundance of eight key taxa across seven depth intervals.

Open full-size image ↗
Original paper figureSource PDF · page 2 ↗
Figure 2. Stacked bar chart of tree, shrub, and herb/grass pollen percentages across the five pollen zones.
Stacked bar chart of tree, shrub, and herb/grass pollen percentages across the five pollen zones.↗ Enlarge
Figure 2
Stacked bar chart of tree, shrub, and herb/grass pollen percentages across the five pollen zones.

Stacked bar chart of tree, shrub, and herb/grass pollen percentages across the five pollen zones.

Open full-size image ↗
Original paper figureSource PDF · page 3 ↗

References

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