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Research article · 2025 · Full text

International Journal of Agriculture and Nutrition

Soil carbon sequestration potential under different land use systems in tropical highlands

Kamarudin YaacobRoslan PutehZamri Ariffin

Volume 7(11) · Pages 172–175 · DOI: 10.33545/26646064.2025.v7.i11c.499 ↗

Research areasSoil Carbon and Nitrogen DynamicsSoil erosion and sediment transportSoil Geostatistics and Mapping

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Abstract

Author-written

How much carbon can tropical highland soils hold, and does the type of land use determine the answer? This research quantified soil organic carbon (SOC) stocks and sequestration rates under six land use systems in the highlands of Johor, Malaysia, between 2021 and 2023. Soil samples were collected at 0-15 cm and 15-30 cm depths from natural forest, rubber plantation, oil palm plantation, rubber-based agroforestry, annual crops (paddy-vegetable rotation), and degraded grassland. Natural forest held the highest carbon stock at 86.2 Mg C/ha in the top 30 cm, followed by agroforestry at 67.8 Mg/ha. Degraded grassland stored the least at 26.8 Mg/ha. Microbial biomass carbon and potentially mineralizable nitrogen mirrored the SOC rankings. Conversion of forest to annual cropping reduced soil carbon stocks by 57.8%, while agroforestry retained 78.6% of the forest carbon. These findings support agroforestry as a land use strategy that balances agricultural production with meaningful carbon sequestration in tropical highland landscapes.

Summary

Source-checked

Plain-language reading of the full paper, prepared with AI and checked against the text. Each point links to the authors' own words.

  1. Why it matters

    • Global soils store approximately 2,500 Gt of organic carbon, with tropical soils contributing a significant portion due to high biomass production and litter input driven by warm, humid climates. View evidence ↗

      Why it matters

      Global soils store approximately 2,500 Gt of organic carbon, with tropical soils contributing a significant portion due to high biomass production and litter input driven by warm, humid climates.

      In the paper's own words

      “Soils store roughly 2,500 Gt of organic carbon globally, more than double the amount held in the atmosphere and vegetation combined, and tropical soils account for a disproportionate share because warm, humid conditions drive high rates of biomass production and litter input”

      Page 1

      Found in: Introduction

      Read it in the full textOpen PDF at page 1 ↗
    • The highlands of Johor, Malaysia, are undergoing rapid land use changes as secondary forests and mixed agroforestry are replaced by oil palm and rubber plantations. View evidence ↗

      Why it matters

      The highlands of Johor, Malaysia, are undergoing rapid land use changes as secondary forests and mixed agroforestry are replaced by oil palm and rubber plantations.

      In the paper's own words

      “The Malaysian highlands of Johor are experiencing rapid land use transition, with rubber and oil palm plantations replacing secondary forest and mixed agroforestry systems”

      Page 1

      Found in: Introduction

      Read it in the full textOpen PDF at page 1 ↗
  2. The question

    • The study aimed to evaluate the carbon sequestration potential of six different land use systems by comparing their soil organic carbon stocks, labile carbon fractions, and microbial activity indicators. View evidence ↗

      The question

      The study aimed to evaluate the carbon sequestration potential of six different land use systems by comparing their soil organic carbon stocks, labile carbon fractions, and microbial activity indicators.

      In the paper's own words

      “This research compared SOC stocks, labile carbon fractions, and microbial activity indicators across six contrasting land use types to evaluate their carbon sequestration potential and identify management practices that conserve soil carbon.”

      Page 1

      Found in: Introduction

      Read it in the full textOpen PDF at page 1 ↗
  3. What they did

    • The research was conducted in the highlands of Johor, Malaysia, between 2021 and 2023, focusing on six distinct land use systems. View evidence ↗

      What they did

      The research was conducted in the highlands of Johor, Malaysia, between 2021 and 2023, focusing on six distinct land use systems.

      In the paper's own words

      “This research quantified soil organic carbon (SOC) stocks and sequestration rates under six land use systems in the highlands of Johor, Malaysia, between 2021 and 2023.”

      Page 1

      Found in: Introduction

      Read it in the full textOpen PDF at page 1 ↗
    • Soil samples were collected in March 2022 and March 2023 at depths of 0-15 cm and 15-30 cm, using five composite samples per site, each consisting of four sub-samples within a 10 m radius. View evidence ↗

      What they did

      Soil samples were collected in March 2022 and March 2023 at depths of 0-15 cm and 15-30 cm, using five composite samples per site, each consisting of four sub-samples within a 10 m radius.

      In the paper's own words

      “Soil sampling was carried out in March 2022 and repeated in March 2023 across the six land use systems. At each site, five composite samples were collected from 0-15 cm and 15-30 cm depths along a diagonal transect, with each composite drawn from four sub-samples within a 10 m radius.”

      Page 2

      Found in: Material and Methods Material

      Read it in the full textOpen PDF at page 2 ↗
    • The study measured SOC using the Walkley-Black method, MBC via chloroform fumigation-extraction, PMN through 7-day anaerobic incubation at 40°C, and labile carbon using 333 mM KMnO₄. View evidence ↗

      What they did

      The study measured SOC using the Walkley-Black method, MBC via chloroform fumigation-extraction, PMN through 7-day anaerobic incubation at 40°C, and labile carbon using 333 mM KMnO₄.

      In the paper's own words

      “SOC was measured by wet oxidation (Walkley-Black method). Carbon stocks were calculated as SOC concentration × bulk density × depth increment. Microbial biomass carbon (MBC) was estimated by the chloroform fumigation-extraction method [7]. Potentially mineralizable nitrogen (PMN) was determined by anaerobic incubation at 40°C for 7 days. Labile carbon was extracted with 333 mM KMnO₄ [8].”

      Page 2

      Found in: Methods

      Read it in the full textOpen PDF at page 2 ↗
    • Carbon sequestration rates were estimated using a paired-site chronosequence approach relative to a forest reference, with data analyzed via ANOVA in a completely randomized design with five replications. View evidence ↗

      What they did

      Carbon sequestration rates were estimated using a paired-site chronosequence approach relative to a forest reference, with data analyzed via ANOVA in a completely randomized design with five replications.

      In the paper's own words

      “Carbon sequestration rate was estimated by the paired-site chronosequence approach, comparing each land use against the forest reference and dividing by years since conversion [9]. Data were analyzed by ANOVA in a completely randomized design with five replications.”

      Page 2

      Found in: Methods

      Read it in the full textOpen PDF at page 2 ↗
  4. What they found

    • Natural forest exhibited the highest soil organic carbon (SOC) at both measured depths and the largest overall carbon stock of 86.2 Mg/ha. View evidence ↗

      What they found

      Natural forest exhibited the highest soil organic carbon (SOC) at both measured depths and the largest overall carbon stock of 86.2 Mg/ha.

      In the paper's own words

      “Natural forest had the highest SOC at both depths and the largest carbon stock of 86.2 Mg/ha (Table 1).”

      Page 2

      Found in: Discussion

      Read it in the full textOpen PDF at page 2 ↗
    • Agroforestry systems had the second-highest carbon stock at 67.8 Mg/ha, which represents 78.6% of the carbon found in natural forests. View evidence ↗

      What they found

      Agroforestry systems had the second-highest carbon stock at 67.8 Mg/ha, which represents 78.6% of the carbon found in natural forests.

      In the paper's own words

      “Agroforestry ranked second at 67.8 Mg/ha, retaining 78.6% of forest carbon.”

      Page 2

      Found in: Introduction

      Read it in the full textOpen PDF at page 2 ↗
    • Soil bulk density increased as land use intensity rose, ranging from 1.08 Mg/m³ in natural forests to 1.34 Mg/m³ in degraded grasslands. View evidence ↗

      What they found

      Soil bulk density increased as land use intensity rose, ranging from 1.08 Mg/m³ in natural forests to 1.34 Mg/m³ in degraded grasslands.

      In the paper's own words

      “Bulk density increased with land use intensity, from 1.08 in forest to 1.34 in degraded grassland.”

      Page 2

      Found in: Material and Methods Material

      Read it in the full textOpen PDF at page 2 ↗
    • Agroforestry showed the highest carbon sequestration rate at 1.46 Mg/ha/yr, which was higher than rubber (1.24 Mg/ha/yr) and oil palm (0.87 Mg/ha/yr) plantations. View evidence ↗

      What they found

      Agroforestry showed the highest carbon sequestration rate at 1.46 Mg/ha/yr, which was higher than rubber (1.24 Mg/ha/yr) and oil palm (0.87 Mg/ha/yr) plantations.

      In the paper's own words

      “Agroforestry had the highest estimated sequestration rate (1.46 Mg/ha/yr), exceeding rubber (1.24) and oil palm (0.87) plantations.”

      Page 2

      Found in: Introduction

      Read it in the full textOpen PDF at page 2 ↗
    • Across all land use systems, the topsoil layer (0-15 cm) contained 61-64% of the total carbon stock found in the top 30 cm. View evidence ↗

      What they found

      Across all land use systems, the topsoil layer (0-15 cm) contained 61-64% of the total carbon stock found in the top 30 cm.

      In the paper's own words

      “The SOC stock in the 0-15 cm layer accounted for 61-64% of the total 0-30 cm stock across all land uses”

      Page 3

      Found in: Comprehensive Interpretation

      Read it in the full textOpen PDF at page 3 ↗
    • A strong positive correlation (r = 0.96) between microbial biomass carbon (MBC) and SOC indicates that MBC is a sensitive indicator of soil carbon status. View evidence ↗

      What they found

      A strong positive correlation (r = 0.96) between microbial biomass carbon (MBC) and SOC indicates that MBC is a sensitive indicator of soil carbon status.

      In the paper's own words

      “A strong positive correlation was found between MBC and SOC (r = 0.96), confirming that microbial biomass serves as a sensitive indicator of soil carbon status.”

      Page 3

      Found in: Comprehensive Interpretation

      Read it in the full textOpen PDF at page 3 ↗
    • Converting natural forest to annual cropping resulted in a 57.8% reduction in soil carbon stocks. View evidence ↗

      What they found

      Converting natural forest to annual cropping resulted in a 57.8% reduction in soil carbon stocks.

      In the paper's own words

      “Conversion of forest to annual cropping reduced soil carbon stocks by 57.8%”

      Page 1

      Found in: Discussion

      Read it in the full textOpen PDF at page 1 ↗
  5. What it means

    • While natural forests have the most carbon, rubber-based agroforestry is the most effective productive land use for matching forest carbon levels while maintaining crop production. View evidence ↗

      What it means

      While natural forests have the most carbon, rubber-based agroforestry is the most effective productive land use for matching forest carbon levels while maintaining crop production.

      In the paper's own words

      “Natural forest holds the highest soil carbon stock, but among productive land uses, rubber-based agroforestry comes closest to matching forest carbon levels while also supporting crop output.”

      Page 3

      Found in: Introduction

      Read it in the full textOpen PDF at page 3 ↗
    • To conserve soil carbon, the authors recommend that Malaysian highland policy promote agroforestry and discourage the conversion of tree-based systems into annual crops. View evidence ↗

      What it means

      To conserve soil carbon, the authors recommend that Malaysian highland policy promote agroforestry and discourage the conversion of tree-based systems into annual crops.

      In the paper's own words

      “Malaysian highlands should promote agroforestry systems and discourage further conversion of tree-based systems to annual crops if soil carbon conservation is a policy objective.”

      Page 4

      Found in: Introduction

      Read it in the full textOpen PDF at page 4 ↗
    • The authors suggest that periodic soil carbon monitoring every 5 to 10 years is necessary to track sequestration trends across different management regimes. View evidence ↗

      What it means

      The authors suggest that periodic soil carbon monitoring every 5 to 10 years is necessary to track sequestration trends across different management regimes.

      In the paper's own words

      “Periodic soil carbon monitoring at 5-10 year intervals is recommended to track sequestration trends under different management regimes.”

      Page 4

      Found in: Introduction

      Read it in the full textOpen PDF at page 4 ↗

Visual summary

3 visuals

Illustrations explain the paper; charts are replotted from the paper's own table values.

AI-generated illustration
AI-generated conceptual illustration (Tropical highland soil profiles under different land use systems). It explains the idea and does not show study data.↗ Enlarge
Comparison of Carbon Stocks by Land Use
AI-generated conceptual illustration (Tropical highland soil profiles under different land use systems). It explains the idea and does not show study data.

AI-generated conceptual illustration (Tropical highland soil profiles under different land use systems). It explains the idea and does not show study data.

Open full-size image ↗

Comparison of Carbon Stocks by Land Use

AI-generated conceptual illustration (Tropical highland soil profiles under different land use systems). It explains the idea and does not show study data.

View source evidence ↗
Replotted from source data
Replotted from Table 1 (page 2) of the original paper. Every bar is the paper's own table value.↗ Enlarge
C Stock 0-30 cm (Mg/ha): Natural Forest vs Rubber Plantation vs Oil Palm Plantation vs Agroforestry... vs Annual Crops (Paddy-...
Replotted from Table 1 (page 2) of the original paper. Every bar is the paper's own table value.

Replotted from Table 1 (page 2) of the original paper. Every bar is the paper's own table value.

Open full-size image ↗

C Stock 0-30 cm (Mg/ha): Natural Forest vs Rubber Plantation vs Oil Palm Plantation vs Agroforestry... vs Annual Crops (Paddy-...

Replotted from Table 1 (page 2) of the original paper. Every bar is the paper's own table value.

View source evidence ↗
Replotted from source data
Replotted from Table 2 (page 2) of the original paper. Every bar is the paper's own table value.↗ Enlarge
Labile C (g/kg): Rubber Plantation vs Oil Palm Plantation vs Agroforestry vs Annual Crops vs Degraded Grassland
Replotted from Table 2 (page 2) of the original paper. Every bar is the paper's own table value.

Replotted from Table 2 (page 2) of the original paper. Every bar is the paper's own table value.

Open full-size image ↗

Labile C (g/kg): Rubber Plantation vs Oil Palm Plantation vs Agroforestry vs Annual Crops vs Degraded Grassland

Replotted from Table 2 (page 2) of the original paper. Every bar is the paper's own table value.

View source evidence ↗

Figures & tables

From the original paper
Soil organic carbon concentration and stocks under six land use systems in tropical highlandsTable 1Page 2Microbial biomass carbon, mineralizable nitrogen, labile carbon, and carbon sequestration rateTable 2Page 2Proportional distribution of total soil carbon stocks across six land use systems in tropical highlandsFigure 1Page 3Soil carbon sequestration pathway showing the progression from atmospheric CO₂ to long-term carbon storage under different landFigure 2Page 3
FULL TEXT Original article · reflowed for reading

Introduction

What happens to the carbon stored in tropical soils when forests give way to farms? This question has taken on fresh urgency as Southeast Asian nations expand agricultural frontiers into highland areas that once served as large carbon reservoirs [1] . Soils store roughly 2,500 Gt of organic carbon globally, more than double the amount held in the atmosphere and vegetation combined, and tropical soils account for a disproportionate share because warm, humid conditions drive high rates of biomass production and litter input [2] . Land use change is the main driver of soil carbon loss in the tropics. Conversion of forest to annual crops typically reduces SOC stocks by 30-60% within two to three decades, while tree-based systems like agroforestry and perennial plantations lose less because they maintain year-round canopy cover and continuous root inputs [3] . The Malaysian highlands of Johor are experiencing rapid land use transition, with rubber and oil palm plantations replacing secondary forest and mixed agroforestry systems [4] . Despite the policy relevance of soil carbon data for national greenhouse gas inventories, field-level measurements from these highland areas remain scarce [5] . This research compared SOC stocks, labile carbon fractions, and microbial activity indicators across six contrasting land use types to evaluate their carbon sequestration potential and identify management practices that conserve soil carbon.

Baseline Soil Characterisation

The research sites were located in the Kluang district of Johor state, peninsular Malaysia (2.03° N, 103.32° E, elevation 80-140 m). Soils belong to the Rengam series (Typic Paleudults), derived from granite parent material, with sandy clay loam to clay texture. Presampling characterization at 0-15 cm gave pH 4.4-5.1 (1:2.5 soil:water), CEC 8.2-14.6 cmol/kg, and total nitrogen 0.12-0.28%. The natural forest site had been undisturbed for at least 50 years. Plantation and crop sites had been under their respective management for 15-22 years, providing sufficient time for land use effects on SOC to stabilize.

Material and Methods Material

Soil sampling was carried out in March 2022 and repeated in March 2023 across the six land use systems. At each site, five composite samples were collected from 0-15 cm and 15-30 cm depths along a diagonal transect, with each composite drawn from four sub-samples within a 10 m radius. Core samples for bulk density were taken using 100 cm³ steel rings. All samples were air-dried, ground, and passed through a 2 mm sieve for chemical analysis [6] . Fresh sub-samples were stored at 4°C for microbial biomass determination.

Methods

SOC was measured by wet oxidation (Walkley-Black method). Carbon stocks were calculated as SOC concentration × bulk density × depth increment. Microbial biomass carbon (MBC) was estimated by the chloroform fumigation-extraction method [7] . Potentially mineralizable nitrogen (PMN) was determined by anaerobic incubation at 40°C for 7 days. Labile carbon was extracted with 333 mM KMnO₄ [8] . Carbon sequestration rate was estimated by the paired-site chronosequence approach, comparing each land use against the forest reference and dividing by years since conversion [9] . Data were analyzed by ANOVA in a completely randomized design with five replications. Treatment means were compared by Duncan's test at P = 0.05.

Results

Results

Comprehensive Interpretation

The SOC stock in the 0-15 cm layer accounted for 61-64% of the total 0-30 cm stock across all land uses, indicating that management practices affecting topsoil organic matter inputs have the greatest influence on total carbon storage. A strong positive correlation was found between MBC and SOC (r = 0.96), confirming that microbial biomass serves as a sensitive indicator of soil carbon status.

Discussion

The 57.8% decline in SOC stocks from forest to annual cropping aligns with global meta-analyses reporting 40-60% losses after tropical deforestation for agriculture [3] . The mechanisms are well understood: removal of tree canopy eliminates continuous litter input, tillage accelerates organic matter decomposition by breaking soil aggregates and exposing protected carbon, and reduced root biomass limits below-ground carbon inputs [2] . That agroforestry retained nearly 79% of forest carbon is encouraging and reflects the capacity of tree-crop combinations to maintain year-round litter fall, deeper root activity, and better aggregate stability than monoculture cropping [10] . The higher sequestration rate in agroforestry (1.46 Mg/ha/yr) compared to monoculture plantations is likely due to the diversity of litter quality, with mixed inputs from different tree and crop species promoting a more complex and stable soil organic matter pool [11] . From a climate policy perspective, these results support the inclusion of agroforestry in national carbon accounting frameworks as a viable land use alternative that delivers both food production and measurable carbon benefits.

Conclusion

Conclusion

Acknowledgement

Acknowledgements Funding SourcesThis research was funded through the Johor Institute of Agricultural Technology's internal research allocation. Institutional SupportThe authors acknowledge the Johor Institute of Agricultural Technology for field and laboratory support. Contributions Not Qualifying for AuthorshipField assistants at the Kluang research station are thanked for help with soil sampling and sample preparation.

Figures and tables from the paper

Table 1. Soil organic carbon concentration and stocks under six land use systems in tropical highlands
Land Use SystemSOC 0-15 cm (g/kg)SOC 15-30 cm (g/kg)C Stock 0-30 cm (Mg/ha)Bulk Density (Mg/m³)
Natural Forest38.424.786.21.08
Rubber Plantation28.618.362.41.16
Oil Palm Plantation22.114.848.71.22
Agroforestry (Rubber+Crops)31.219.667.81.14
Annual Crops (Paddy- Vegetables)16.811.436.41.28
Degraded Grassland12.38.726.81.34
SEm(±)1.841.123.67-
CD (P=0.05)5.523.3611.01-

Table text extracted from the original PDF; superscript letters are shown inline. The original table image is below.

View original table image
Soil organic carbon concentration and stocks under six land use systems in tropical highlands↗ Enlarge
Table 1
Soil organic carbon concentration and stocks under six land use systems in tropical highlands

Soil organic carbon concentration and stocks under six land use systems in tropical highlands

Open full-size image ↗
Original paper tableSource PDF · page 2 ↗
Table 2. Microbial biomass carbon, mineralizable nitrogen, labile carbon, and carbon sequestration rate
Land Use SystemMBC (µg/g)PMN (mg/kg)Labile C (g/kg)C Seq. Rate (Mg/ha/yr)
Natural Forest487.328.44.82Reference
Rubber Plantation342.619.73.411.24
Oil Palm Plantation264.814.22.680.87
Agroforestry378.422.83.781.46
Annual Crops186.210.61.840.42
Degraded Grassland124.77.31.210.18
SEm(±)21.41.470.24-
CD (P=0.05)64.24.410.72-

Table text extracted from the original PDF; superscript letters are shown inline. The original table image is below.

View original table image
Microbial biomass carbon, mineralizable nitrogen, labile carbon, and carbon sequestration rate↗ Enlarge
Table 2
Microbial biomass carbon, mineralizable nitrogen, labile carbon, and carbon sequestration rate

Microbial biomass carbon, mineralizable nitrogen, labile carbon, and carbon sequestration rate

Open full-size image ↗
Original paper tableSource PDF · page 2 ↗
Figure 1. Proportional distribution of total soil carbon stocks across six land use systems in tropical highlands
Proportional distribution of total soil carbon stocks across six land use systems in tropical highlands↗ Enlarge
Figure 1
Proportional distribution of total soil carbon stocks across six land use systems in tropical highlands

Proportional distribution of total soil carbon stocks across six land use systems in tropical highlands

Open full-size image ↗
Original paper figureSource PDF · page 3 ↗
Figure 2. Soil carbon sequestration pathway showing the progression from atmospheric CO₂ to long-term carbon storage under different land
Soil carbon sequestration pathway showing the progression from atmospheric CO₂ to long-term carbon storage under different land↗ Enlarge
Figure 2
Soil carbon sequestration pathway showing the progression from atmospheric CO₂ to long-term carbon storage under different land

Soil carbon sequestration pathway showing the progression from atmospheric CO₂ to long-term carbon storage under different land

Open full-size image ↗
Original paper figureSource PDF · page 3 ↗

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