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Research article · 2024 · Full text

International Journal of Research in Agronomy

Assessment and management of diverse isolates of Colletotrichum falcatum associated with red rot disease in sugarcane

Jyothi Anna KurianM.D. JehaniJabril Mukhtar MohamedSonal Vaja

Volume 7(7) · Pages 417–425 · DOI: 10.33545/2618060x.2024.v7.i7e.1062 ↗

Research areasPlant Pathogens and Fungal DiseasesSugarcane Cultivation and ProcessingBanana Cultivation and Research

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Abstract

Author-written

Red rot, a devastating disease affecting sugarcane worldwide, is caused by the pathogen Colletotrichum falcatum. This menace poses a serious threat to sugarcane production, affecting all parts of the sugarcane plant, including leaves, midribs, and stalks. In our comprehensive study, we investigated the morphological, cultural, and pathogenic variability among isolates from midribs and stalks infected with the red rot pathogen. Our research revealed significant variations in mycelium growth among the three isolates from midribs and stalks. These isolates displayed distinct characteristics such as raised fluffy or flat white mycelium growth with light orange pigmentation and a medium to high level of sporulation. The conidia exhibited a falcate shape with an average size of 28.3 µm x 6.75 µm. Pathogenicity was assessed using both the pinprick and plug methods, both of which effectively evaluated disease severity in the CoJ 85 sugarcane variety. An epidemiological investigation highlighted the significant influence of relative humidity on disease development. To combat red rot, we evaluated seven different treatments. Among these, Bavistin, Trichoderma harzianum, and T. viride emerged as the most effective approaches. In addition to fungicides, biocontrol agents have shown promise in managing red rot by targeting C. falcatum and inducing systemic resistance in treated plants.

Summary

Source-checked

Plain-language reading of the full paper, prepared with AI and checked against the text. Each point links to the authors' own words.

  1. Why it matters

    • Red rot is a destructive global disease of sugarcane caused by the fungus Colletotrichum falcatum, which can infect the plant's stalks, midribs, and leaves. View evidence ↗

      Why it matters

      Red rot is a destructive global disease of sugarcane caused by the fungus Colletotrichum falcatum, which can infect the plant's stalks, midribs, and leaves.

      In the paper's own words

      “Red rot, a devastating disease affecting sugarcane worldwide, is caused by the pathogen Colletotrichum falcatum. This menace poses a serious threat to sugarcane production, affecting all parts of the sugarcane plant, including leaves, midribs, and stalks.”

      Page 1

      Found in: Conclusion

      Read it in the full textOpen PDF at page 1 ↗
    • The disease is critical to manage because it reduces both the overall crop yield and the quality of the resulting sugarcane juice and commercial sugar. View evidence ↗

      Why it matters

      The disease is critical to manage because it reduces both the overall crop yield and the quality of the resulting sugarcane juice and commercial sugar.

      In the paper's own words

      “This ailment not only reduces yield but also diminishes the quality of commercial cane sugar and sugarcane juice, highlighting the urgent need for effective management strategies.”

      Page 2

      Found in: Introduction

      Read it in the full textOpen PDF at page 2 ↗
    • Because red rot is complex, single-method approaches are ineffective, making integrated disease management (IDM) essential for the industry. View evidence ↗

      Why it matters

      Because red rot is complex, single-method approaches are ineffective, making integrated disease management (IDM) essential for the industry.

      In the paper's own words

      “Given the complexity of the issue, relying on a single approach is ineffective. Therefore, integrated disease management (IDM) is essential in the sugarcane industry”

      Page 2

      Found in: Introduction

      Read it in the full textOpen PDF at page 2 ↗
  2. The question

    • The study aimed to assess the morphological, cultural, and pathogenic variability of C. falcatum isolates and evaluate their management using IDM protocols. View evidence ↗

      The question

      The study aimed to assess the morphological, cultural, and pathogenic variability of C. falcatum isolates and evaluate their management using IDM protocols.

      In the paper's own words

      “This research aims to achieve two objectives: i) assess various isolates of Colletotrichum falcatum for morphological, cultural, and pathogenic variability, and ii) evaluate the management of these isolates through in vitro testing using integrated disease management protocols.”

      Page 2

      Found in: Introduction

      Read it in the full textOpen PDF at page 2 ↗
  3. What they did

    • The researchers examined approximately three isolates each from the midribs and stalks of infected sugarcane. View evidence ↗

      What they did

      The researchers examined approximately three isolates each from the midribs and stalks of infected sugarcane.

      In the paper's own words

      “Approximately three isolates each from midribs and stalks were examined for morphological, cultural, and pathogenic variability.”

      Page 2

      Found in: Materials and Methods

      Read it in the full textOpen PDF at page 2 ↗
    • Pathogenicity was tested on the CoJ 85 variety, with midrib isolates tested in the field and stalk isolates tested in a laboratory setting. View evidence ↗

      What they did

      Pathogenicity was tested on the CoJ 85 variety, with midrib isolates tested in the field and stalk isolates tested in a laboratory setting.

      In the paper's own words

      “For midrib isolates, strain CoJ 85 was selected, and pathogenicity tests were conducted in the field using healthy sugarcane plants. ... For stalk isolates, testing was carried out in a controlled laboratory environment using the same sugarcane variety.”

      Page 2

      Found in: Pathogenic variation in stalk and midrib isolates on differential

      Read it in the full textOpen PDF at page 2 ↗
    • A field experiment during the 2022-2023 season used a randomized block design with three replications to test seven different IDM treatments on CoJ 85 variety setts. View evidence ↗

      What they did

      A field experiment during the 2022-2023 season used a randomized block design with three replications to test seven different IDM treatments on CoJ 85 variety setts.

      In the paper's own words

      “The experiment used the CoJ 85 variety, planted as two-budded setts, and tested seven different treatments. Each treatment was replicated three times following a randomized block design during the 2022-2023 growing season (Table 1).”

      Page 3

      Found in: Integrated disease management of Colletotrichum falcatum on sugarcane

      Read it in the full textOpen PDF at page 3 ↗
  4. What they found

    • Midrib isolates showed rapid growth, with colony diameters increasing from 27.5–35.5 mm at 3 days to 79.5–84.5 mm by day 7. View evidence ↗

      What they found

      Midrib isolates showed rapid growth, with colony diameters increasing from 27.5–35.5 mm at 3 days to 79.5–84.5 mm by day 7.

      In the paper's own words

      “Among the midrib isolates (KM-1, JM-2, and LM-3), rapid growth was observed with colony diameters ranging from 27.5 to 35.5 mm after 3 days of incubation. ... By the 7th day, the midrib isolates had nearly covered the Petri dishes; with colony diameters ranging from 79.5 to 84.5 mm.”

      Page 3

      Found in: Midrib Isolates

      Read it in the full textOpen PDF at page 3 ↗
    • Stalk isolates also grew rapidly, though they were generally smaller than midrib isolates, ranging from 24.5–29.5 mm at 3 days to 70.5–79.5 mm by day 7. View evidence ↗

      What they found

      Stalk isolates also grew rapidly, though they were generally smaller than midrib isolates, ranging from 24.5–29.5 mm at 3 days to 70.5–79.5 mm by day 7.

      In the paper's own words

      “On the 3rd day, the stalk isolates (KS-1, JS-2, and LS-3) also showed rapid growth, with colony diameters ranging from 24.5 to 29.5 mm. ... By the 7th day, the stalk isolates had grown further, with diameters ranging from 70.5 to 79.5 mm”

      Page 3

      Found in: Stalk Isolates

      Read it in the full textOpen PDF at page 3 ↗
    • Stalk isolates had larger average conidia (30.5 µm x 7.4 µm) compared to midrib isolates (26.1 µm x 6.1 µm). View evidence ↗

      What they found

      Stalk isolates had larger average conidia (30.5 µm x 7.4 µm) compared to midrib isolates (26.1 µm x 6.1 µm).

      In the paper's own words

      “The average dimensions of conidia from midrib isolates ranged around 26.1 µm x 6.1 µm. ... Stalk isolates displayed an average spore size of approximately 30.5 µm x 7.4 µm.”

      Page 4

      Found in: Midrib Isolates

      Read it in the full textOpen PDF at page 4 ↗
    • Stalk isolate KS-1 was highly virulent, causing 100% spread across two internodes, while JS-2 showed intermediate virulence with over 50% spread across nearly one internode. View evidence ↗

      What they found

      Stalk isolate KS-1 was highly virulent, causing 100% spread across two internodes, while JS-2 showed intermediate virulence with over 50% spread across nearly one internode.

      In the paper's own words

      “the KS-1 inoculated cane exhibited lesions covering two internodes with 100% spread, indicating susceptibility of CoJ 85 to KS-1. Meanwhile, JS-2 resulted in lesions covering nearly one internode with more than 50% spread, indicating an intermediate susceptibility of CoJ 85 to JS-2.”

      Page 4

      Found in: Stalk Isolates

      Read it in the full textOpen PDF at page 4 ↗
    • Bavistin (0.25% sett application and foliar spray) was the most effective treatment, resulting in 9.32% disease intensity before harvest, compared to 29.89% in the C. falcatum spore treatment. View evidence ↗

      What they found

      Bavistin (0.25% sett application and foliar spray) was the most effective treatment, resulting in 9.32% disease intensity before harvest, compared to 29.89% in the C. falcatum spore treatment.

      In the paper's own words

      “Prior to harvesting, the treatment with Bavistin @ 0.25% sett application plus foliar spray showed the best disease management (9.32%). The highest disease intensity (29.89%) was observed in the treatment using C. falcatum spores on setts.”

      Page 4

      Found in: Integrated disease management of Colletotrichum falcatum on sugarcane

      Read it in the full textOpen PDF at page 4 ↗
  5. What it means

    • The authors conclude that Bavistin, T. harzianum, and T. viride are the most effective agents for managing red rot in sugarcane. View evidence ↗

      What it means

      The authors conclude that Bavistin, T. harzianum, and T. viride are the most effective agents for managing red rot in sugarcane.

      In the paper's own words

      “In managing red rot, a comparative evaluation of seven treatments revealed that applications containing Bavistin, T. harzianum, and T. viride were most effective.”

      Page 8

      Found in: Conclusion

      Read it in the full textOpen PDF at page 8 ↗
    • The authors state that biocontrol agents are beneficial because they directly attack the pathogen and induce systemic resistance in the plants. View evidence ↗

      What it means

      The authors state that biocontrol agents are beneficial because they directly attack the pathogen and induce systemic resistance in the plants.

      In the paper's own words

      “Beyond fungicides, the application of biocontrol agents has proven beneficial by directly impacting C. falcatum and inducing systemic resistance in sugarcane plants propagated from treated setts.”

      Page 8

      Found in: Conclusion

      Read it in the full textOpen PDF at page 8 ↗

Visual summary

3 visuals

Illustrations explain the paper; charts are replotted from the paper's own table values.

AI-generated illustration
AI-generated conceptual illustration (Sugarcane plants (Saccharum officinarum) and Colletotrichum falcatum fungus). It explains the idea and does not show study data.↗ Enlarge
Pathogen Distribution in Sugarcane
AI-generated conceptual illustration (Sugarcane plants (Saccharum officinarum) and Colletotrichum falcatum fungus). It explains the idea and does not show study data.

AI-generated conceptual illustration (Sugarcane plants (Saccharum officinarum) and Colletotrichum falcatum fungus). It explains the idea and does not show study data.

Open full-size image ↗

Pathogen Distribution in Sugarcane

AI-generated conceptual illustration (Sugarcane plants (Saccharum officinarum) and Colletotrichum falcatum fungus). It explains the idea and does not show study data.

View source evidence ↗
AI-generated illustration
AI-generated conceptual illustration (Sugarcane plants and Colletotrichum falcatum fungi). It explains the idea and does not show study data.↗ Enlarge
Integrated Management Strategy
AI-generated conceptual illustration (Sugarcane plants and Colletotrichum falcatum fungi). It explains the idea and does not show study data.

AI-generated conceptual illustration (Sugarcane plants and Colletotrichum falcatum fungi). It explains the idea and does not show study data.

Open full-size image ↗

Integrated Management Strategy

AI-generated conceptual illustration (Sugarcane plants and Colletotrichum falcatum fungi). It explains the idea and does not show study data.

View source evidence ↗
Replotted from source data
Replotted from Table 2 (page 7) of the original paper. Every bar is the paper's own table value.↗ Enlarge
Colony diameter (mm) / 3rd day and 5th day and more: KM-1 vs JM-2 vs LM-3 vs KS-1 vs JS-2
Replotted from Table 2 (page 7) of the original paper. Every bar is the paper's own table value.

Replotted from Table 2 (page 7) of the original paper. Every bar is the paper's own table value.

Open full-size image ↗

Colony diameter (mm) / 3rd day and 5th day and more: KM-1 vs JM-2 vs LM-3 vs KS-1 vs JS-2

Replotted from Table 2 (page 7) of the original paper. Every bar is the paper's own table value.

View source evidence ↗

Figures & tables

From the original paper
Colony growth of stalk isolateFigure 3Page 5Colony growth of midrib isolateFigure 2Page 5Different midrib and stalk isolatesFigure 1Page 5Pathogenicity test of Colletotrichum falcatum on stalkFigure 6Page 6Pathogenicity test of Colletotrichum falcatum on midribFigure 5Page 6Characteristics features of Colletotrichum falcatumFigure 4Page 6Treatment detailsTable 1Page 7Colony diameter of midrib and stalk isolatesTable 2Page 7Colony characters of midrib and stalk isolatesTable 3Page 7Conidial characteristics of midrib and stalk isolatesTable 4Page 7Pathogenicity testing of midrib isolates under field conditionsTable 5Page 7Pathogenicity testing of stalk isolates under laboratory conditionsTable 6Page 7Data of disease incidence during treatmentsTable 7Page 8
FULL TEXT Original article · reflowed for reading

Introduction

Sugarcane (Saccharum officinarum L.) is a perennial grass of the Poaceae family, extensively grown for its juice, which serves as the primary raw material for sugar production. This adaptable crop flourishes in tropical and subtropical regions of India and holds significant economic importance. Besides its pivotal role in sugar production, sugarcane plays a crucial part in the biofuel sector, where it is utilized for ethanol production. According to the FAO's 2021 [10] report, the leading sugarcane-producing countries include Brazil, India, Thailand, Pakistan, Mexico, and Australia. India emerges as a significant global player in sugarcane cultivation, covering an expansive area of 48.7 million hectares. The impressive productivity of sugarcane was notable during the 2021-2022 periods, with the country's production surpassing 500 million metric tonnes (Anon., 2022a) [3] . A crucial contributor to this achievement is Punjab, where sugarcane holds pivotal importance as a cash crop. In 2022, Punjab achieved substantial yields, producing a total of 6.6 million metric tonnes on 0.92 million acres of land (Anon., 2022b) [4] . Sugarcane growers face a myriad of challenges in production, resulting in significant losses due to both living organisms and environmental factors. Environmental challenges such as droughts, floods, typhoons, extreme heat, frost, and poor soil fertility greatly affect crop yields (Talukder et al., 2000) [23] . Additionally, sugarcane is susceptible to various pathogenic microorganisms including fungi, bacteria, viruses, mycoplasma, and nematodes. Among these, red rot caused by Colletotrichum falcatum Went (also known as Glomerella tucumanensis (Speg.) V. Arx and E. Muller in its perfect stage) consistently threatens sugarcane cultivation across different regions in the country (Viswanathan et al., 2002) [26] . Severe outbreaks of this disease can lead to extensive damage in the fields and complete loss of crops, often referred to as the 'Cancer' of sugarcane (Khan et al. 2011) [14] . This ailment not only reduces yield but also diminishes the quality of commercial cane sugar and sugarcane juice, highlighting the urgent need for effective management strategies. In 1893 [28] , Went documented the emergence of red rot disease in Java (now part of Indonesia). He attributed the pathogen to Colletotrichum falcatum Went. The devastating impact of red rot was particularly notable in India between 1895 and 1899, affecting the Red Mauritius cultivar in the Godavari delta of the Madras Presidency (Barber, 1901) [5] . This disease subsequently spread throughout tropical India, causing significant crop damage and resulting in the rejection of several commercial varieties such as CoJ 64, CoJ 82, CoJ 84, and CoJ 1148 within the region (Viswanathan 2010) [24] . Identification of Colletotrichum falcatum involves detailed examination of its distinct morphological and cultural characteristics, including acervuli with setae, presence or absence of a teleomorph, colony color, sporulation patterns, and mycelium growth (Viswanathan et al., 2003) [25] . Managing red rot in sugarcane has long been recognized as a challenging task. Pathogen virulence is influenced by environmental factors, plant genotypes, and the presence of aggressive pathogens. Current management strategies primarily focus on agricultural methods aimed at reducing pathogen prevalence in fields. Given the complexity of the issue, relying on a single approach is ineffective. Therefore, integrated disease management (IDM) is essential in the sugarcane industry (Agnihotri 1996; Ghazanfar et al. 2017) [2,11] . The primary objective of IDM techniques is to mitigate the risks of red rot during replanting while simultaneously enhancing sugarcane yields. IDM includes a variety of practices such as cultural methods, the use of disease-free setts, resistant varieties, physical interventions, biological control, and chemical measures. These practices have been shown to significantly improve growth parameters and enhance sugarcane quality by reducing the prevalence of red rot compared to non-IDM techniques. Implementing integrated disease management techniques has become indispensable for successful sugarcane cultivation in India and other countries. This research aims to achieve two objectives: i) assess various isolates of Colletotrichum falcatum for morphological, cultural, and pathogenic variability, and ii) evaluate the management of these isolates through in vitro testing using integrated disease management protocols.

Materials and Methods

Red rot-affected canes and leaves from various sugarcane fields in Punjab were collected, encompassing different varieties. Approximately three isolates each from midribs and stalks were examined for morphological, cultural, and pathogenic variability. Pathogenic variability was assessed both in vivo and in vitro using differentials.

Collection, Isolation and Purification

The diseased midrib and stalk samples were gathered from farms in Jalandhar, Kapurthala, and Lovely Professional University (LPU) fields and transported to the Laboratory of Plant Pathology at LPU in Phagwara. After thorough washing with tap water, the samples were air-dried. Isolation procedures were conducted under sterile laminar airflow conditions. The midrib and stalk samples were finely chopped and surface sterilized with 1% sodium hypochlorite (NaOCl) for 1 minute, followed by multiple rinses with sterile water. The sterilized samples were then dried on sterile tissue paper. Isolation was carried out on water-agar medium (20 g agar in 1000 ml distilled water), and Petri plates were incubated at a controlled temperature of 28±1 °C in a BOD incubator or at room temperature for 7-10 days. Subsequently, the pathogen was sub-cultured using the single hyphal tip culture method on potato dextrose agar (PDA) medium (200 g peeled potato, 20 g dextrose, and 20 g agar agar in 1000 ml distilled water) and incubated at 28±1 °C in a BOD incubator for 15 days to promote proper sporulation.

Identification based on morphological and cultural characters of pathogen

Identification of the causative organism's genus relied on analyzing its morphological and cultural characteristics. These included observing conidial shape and size, mycelial coloration, colony growth patterns, pigmentation, and other growth traits. Additionally, pertinent scientific literature was consulted to aid in precise identification. Inoculated samples were incubated in Petri plates at a controlled temperature of 28±1 °C for 15 days to facilitate active sporulation of the pathogen. Post-incubation, morphological and cultural features such as sporulation, pigmentation, mycelial growth, colony diameter (measured in millimetres), and overall colony appearance were meticulously examined and recorded. Conidial sizes were measured using an ocular micrometer, and spore counts were determined by preparing a mycelial suspension (1×10³ CFU/ml) from a 10-day-old culture in sterile distilled water, followed by quantification using a haemocytometer. Furthermore, microphotographs of slides were taken to document conidial shape and size.

Pathogenic variation in stalk and midrib isolates on differential

To evaluate the pathogenicity of Colletotrichum falcatum, pure cultures of freshly prepared isolates obtained from stalks and midribs were utilized. These isolates, aged between 7 to 10 days, were employed in our experiments. For midrib isolates, strain CoJ 85 was selected, and pathogenicity tests were conducted in the field using healthy sugarcane plants. Specifically, we targeted the upper, middle, and lower leaves of each plant. A spore suspension with a concentration of 1×10 3 CFU/ml was meticulously prepared in distilled water using a homogenizer. Inoculation of midrib isolates was performed using both the pin prick and cotton swab methods. Disease progression was monitored at 7-day intervals over a period of 21 days. For stalk isolates, testing was carried out in a controlled laboratory environment using the same sugarcane variety. Stalk isolates were introduced via the plug method and allowed to incubate at room temperature for 20 days.

Symptomology of disease

Disease data were meticulously recorded concerning infections and symptoms appearing on the leaf midrib and stalk. The observations concentrated on measuring lesion lengths along the midrib. Furthermore, canes were meticulously split open to examine infections, evaluating factors such as lesion width, the number of internodes breached by the pathogen, and the presence of white spots on the inner tissues.

Integrated disease management of Colletotrichum falcatum on sugarcane

Sugarcane is of considerable economic importance, but it faces a significant threat from red rot, a fungal disease that severely impacts its yield. To combat Colletotrichum falcatum effectively, one of the most damaging fungal pathogens in sugarcane, an integrated management study was conducted at the agricultural field of LPU campus in Punjab. The experiment used the CoJ 85 variety, planted as two-budded setts, and tested seven different treatments. Each treatment was replicated three times following a randomized block design during the 2022-2023 growing season (Table 1). Throughout the study, the sugarcane crop was meticulously monitored to evaluate disease intensity. Initial observations were recorded promptly upon the disease's detection in the field, using a predefined formula. Subsequent assessments were conducted at 15-day intervals to track the disease's progression and assess the effectiveness of the treatments.

Table 1. Treatment details
Sr. No.Treatments
T1Sett treatment with Bavistin @ 0.25% + foliar spray of Bavistin @ 0.25%
T2Sett treatment with Colletotrichum falcatum spores
T3Sett treatment with Trichoderma harzianum @ 10 g/kg + Foliar spray of T. harzianum @ 10 g/l
T4Sett treatment with Trichoderma viride @ 10 g/kg + Foliar spray of T. harzianum @ 10 g/L
T5Sett treatment with C. falcatum spore suspension + Trichoderma harzianum @ 10 g/kg
T6Sett treatment with C. falcatum + Trichoderma viride @ 10 g/ kg
T7Control (no treatment)

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Table 1
Treatment details

Treatment details

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Results and Discussion

Red rot, caused by the fungus C. falcatum Went, poses a major threat to the cultivation of sugarcane varieties in states where sugarcane is grown, especially under the specific conditions found in Punjab. This study explores various scientific aspects, integrating pertinent weather variables and management strategies to tackle this urgent problem.

Isolation, Purification, and Identification

Various isolates obtained from infected midrib and stalk samples of red rot were extracted using the method outlined in the Materials and Methods section (2.1 Collection, Isolation, and Purification), depicted in Figure 1. These cultures were subsequently transferred to test tube slants and stored in a refrigerator for further investigation.

Figure 1. Different midrib and stalk isolates
Different midrib and stalk isolates↗ Enlarge
Figure 1
Different midrib and stalk isolates

Different midrib and stalk isolates

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Identification

Red rot samples were collected from different regions in Punjab, including Kapurthala, Jalandhar, and the LPU field. From these samples, we isolated distinct midrib and stalk strains: Kapurthala midrib isolates (KM-1), Kapurthala stalk isolates (KS-1), Jalandhar midrib isolates (JM-2), Jalandhar stalk isolates (JS-2), LPU field midrib isolate (LM-3), and LPU field stalk isolate (LS-3) of C. falcatum. These isolates were cultured on Potato Dextrose Agar (PDA). Identification involved analyzing the pathogen's morphological and cultural characteristics, comparing the isolates with references in scientific literature. According to descriptions in previous studies, a creamy-grey fungus was isolated from both midrib and stalk samples (Sarkar, 1960; Prakasan and Venkatareddy, 1961; Sharma, 1970) [19,17,20] (Fig. 2).

Figure 2. Colony growth of midrib isolate
Colony growth of midrib isolate↗ Enlarge
Figure 2
Colony growth of midrib isolate

Colony growth of midrib isolate

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Original paper figureSource PDF · page 5 ↗

Morphological and Cultural characters of pathogen

Morphological and cultural traits of C. falcatum were analyzed through direct observation and stereobinocular microscopic examination. Characteristics such as sporulation, pigmentation, mycelium growth, colony diameter (in mm), and overall colony development were evaluated. Conidia size for each isolate was measured using an ocular micrometer, and spore counts were determined with a hemocytometer. Microphotographs of slides were taken to record conidia shape and size.

Colony diameter of midrib and stalk isolates

The three midrib and stalk isolates were cultured on potato dextrose agar (PDA) medium in Petri plates, and the colony diameters were measured at 3, 5, and 7 days post-incubation at 28±1 °C in a BOD incubator. The data are presented in Table 2.

Table 2. Colony diameter of midrib and stalk isolates
Sr. No.IsolatesColony diameter (mm)——
3rd day5th day7th day
Midrib isolatesKM-127.566.584.5
JM-235.566.079.5
LM-334.559.582.5
Stalk isolatesKS-124.544.570.5
JS-228.546.572.5
LS-329.551.579.5

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Table 2
Colony diameter of midrib and stalk isolates

Colony diameter of midrib and stalk isolates

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Midrib Isolates

Among the midrib isolates (KM-1, JM-2, and LM-3), rapid growth was observed with colony diameters ranging from 27.5 to 35.5 mm after 3 days of incubation. KM-1 exhibited the smallest colony diameter at 27.5 mm. By the 5th day, the midrib isolates showed significant growth; with diameters ranging from 55.5 to 59.5 mm. LM-3 displayed the smallest diameter at 59.5 mm. By the 7th day, the midrib isolates had nearly covered the Petri dishes; with colony diameters ranging from 79.5 to 84.5 mm. JM-2 had the smallest diameter at 79.5 mm (Fig. 3).

Figure 3. Colony growth of stalk isolate
Colony growth of stalk isolate↗ Enlarge
Figure 3
Colony growth of stalk isolate

Colony growth of stalk isolate

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Stalk Isolates

On the 3rd day, the stalk isolates (KS-1, JS-2, and LS-3) also showed rapid growth, with colony diameters ranging from 24.5 to 29.5 mm. By the 5th day, their diameters had increased to 44.5-51.5 mm. LS-3 exhibited the largest diameter at 51.5 mm. By the 7th day, the stalk isolates had grown further, with diameters ranging from 70.5 to 79.5 mm (Fig. 4). As indicated in Table 1, there was significant variation in mycelial growth among the three midrib and stalk isolates of Colletotrichum falcatum. Previous studies by and Viswanathan et al. (2003) [26] also reported significant differences in colony growth patterns when investigating C. falcatum pathotypes.

Figure 4. Characteristics features of Colletotrichum falcatum
Characteristics features of Colletotrichum falcatum↗ Enlarge
Figure 4
Characteristics features of Colletotrichum falcatum

Characteristics features of Colletotrichum falcatum

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Mycelium characters of midrib and stalk isolates

The growth pattern, sporulation, and pigmentation of the colonies isolated from midribs and stalks were observed after 7 days of incubation on PDA medium. Detailed data can be found in Table 3 and Fig. 4.

Table 3. Colony characters of midrib and stalk isolates
IsolatesColony Characters——
Mycelium growthPigmentationSporulation
KM-1Raised fluffyWhite cottony mass with light orange pigment+++
JM-2Raised fluffyWhitish mycelium with greyish orange pigment++
LM-3Raised fluffyWhite mycelium with light orange colour+++
KS-1FlatWhitish-grey mycelium++
JS-2FlatWhite mycelium with dark violet pigment++
LS-3Less fluffyWhitish with pale orange pigmentation+++
+++ - High sporulation, ++ - Medium sporulation, + - Less sporulation

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Colony characters of midrib and stalk isolates

Colony characters of midrib and stalk isolates

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Midrib Isolates 3.2.2.1.1. Mycelium growth pattern and Sporulation

All three midrib isolates of Colletotrichum falcatum (KM-1, JM-2, and LM-3) exhibited a raised, fluffy mycelial growth pattern with abundant sporulation. However, JM-2 showed moderate sporulation compared to the other midrib isolates.

Colony colour

The midrib isolates exhibited raised fluffy mycelial growth. The KM-1 isolate displayed a whitish cottony mass when viewed from the front, with a light orange pigmentation on the reverse side of the culture. In contrast, the JM-2 isolate featured white mycelium with light orange pigmentation on the front view and orange with grey pigmentation on the reverse of the culture plate. The LM-3 isolate resembled the KM-1 isolate; showing white mycelial masses with light orange pigmentation (see Fig 2).

Stalk Isolates 3.2.2.2.1. Mycelium growth pattern and Sporulation

Two out of the three stalk isolates exhibit a flat colony growth pattern: KS-1 and JS-2. Meanwhile, the LS-3 isolate demonstrates a less fluffy mycelium growth pattern. All three isolates are expected to show medium to high levels of sporulation.

Colony colour

In stalk isolates, KS-1 exhibited a whitish-grey pigmentation. In contrast, isolate JS-2 displayed white mycelium accompanied by dark violet pigmentation in culture. The LS-3 isolate featured a less fluffy, whitish mycelium with a pale orange hue on the culture (Fig 3).

Conidial characters of midrib and stalk isolates

Conidial size for each isolate was measured using an ocular micrometer. Spore count was determined by preparing a mycelial suspension (1×10³ CFU/ml) from 10-day-old cultures in distilled sterilized water using a homogenizer, and counting with a hemocytometer. Microphotographs of slides were taken to record the shape and size of conidia, and detailed data are presented in Table 4 and Fig. 4.

Table 4. Conidial characteristics of midrib and stalk isolates
Midrib isolatesSpore shapeSpore size (µm) (L x B)Spore count (spores/ml)Stalk isolatesSpore shapeSpore size (µm) (L x B)Spore count (spores/ml)
KM-1Falcate26.7 x 6.2104 x 10²KS-1Falcate34.5 x 7.9125 x 10²
JM-2Falcate27.0 x 6.9116 x 10²JS-2Falcate27.8 x 7.0113 x 10²
LM-3Falcate24.7 x 5.3107 x 10²LS-3Falcate29.3 x 7.4100 x 10²
Mean size26.1 µm x 6.1 µmMean size30.5 µm x 7.4 µm

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Midrib Isolates

The average dimensions of conidia from midrib isolates ranged around 26.1 µm x 6.1 µm. Among these isolates, JM-2 exhibited the largest conidia measuring 26.7 µm x 6.2 µm, while LM-3 had the smallest, measuring 24.7 µm x 5.3 µm. All conidia observed were falcate in shape, with sporulation counts ranging from 104 x 10² to 116 x 10² per isolate.

Stalk Isolates

Stalk isolates displayed an average spore size of approximately 30.5 µm x 7.4 µm. These spores exhibited a falcate shape, with sporulation rates ranging from 100 x 10² to 125 x 10². Among these isolates, KS-1 had the largest spores, measuring 34.5 µm x 7.9 µm, while JS-2 exhibited the smallest spores at 27.8 µm x 7.0 µm. Our observations regarding the morphological and cultural characteristics of various midrib and stalk isolates align closely with earlier studies by Chona and Srivastava (1960) [9] . They noted that conidia from different isolates varied in length from 10 µm to 36 µm. Similarly, other studies have reported colony characteristics and conidial dimensions, with sizes ranging from 17.1 µm to 2.84 µm x 4.5 µm to 6.8 µm (Pandey and Sakel, 1974) [16] . Jothi (1989) [13] categorized different C. falcatum isolates based on criteria such as color, texture, and sporulation.

Pathogenicity assay

Pathogenicity tests of midrib and stalk isolates of Colletotrichum falcatum were conducted under both field and laboratory conditions using the CoJ 85 variety of sugarcane. For midrib isolates, inoculation was performed using two methods: the pin prick and cotton swab techniques on the upper, middle, and lower leaves of healthy plants. Disease progression was monitored at 7-day intervals for up to 21 days after inoculation. Stalk isolates were inoculated using the plug method with a pure culture of the pathogen and were kept at room temperature. Disease symptoms were observed and recorded after a 20-day incubation period.

Midrib Isolates

Isolates such as KM-1 and JS-2 were introduced into the CoJ 85 variety of sugarcane under field conditions. Using the pinprick method, these isolates were inoculated into the upper, middle, and lower leaves of each plant. Data was collected on the 7th, 10th, 16th, and 21st days post-inoculation. The lesions on the midribs of the inoculated leaves revealed larger sizes on the lower leaves and smaller sizes on the middle leaves of sugarcane. When comparing KM-1 and JS-2 isolates, KM-1 induced larger midrib lesions than JS-2. The details are presented in Table 5 and Figure 5. The pinprick method proved to be effective and efficient for evaluating the pathogenicity of Colletotrichum falcatum isolates in sugarcane. Previous studies by Abraham et al. (1980) [1] and Mehetre (2009) [15] have demonstrated that creating wounds using the pinprick method and inoculating with spore suspensions are reliable techniques for assessing the pathogenicity of Colletotrichum species on plants.

Table 5. Pathogenicity testing of midrib isolates under field conditions
Midrib isolatesLeaf7th day10th day16th day21st day
KM-1Upper1.9 cm2.3 cm2.4 cm2.6 cm
Middle1.3 cm1.3 cm1.4 cm1.5 cm
Lower4.5 cm5.0 cm5.3 cm6.0 cm
JM-2Upper2.1 cm2.4 cm2.5 cm2.5 cm
Middle1.5 cm1.7 cm1.9 cm2.0 cm
Lower2.5 cm3.3 cm3.8 cm4.0 cm

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Figure 5. Pathogenicity test of Colletotrichum falcatum on midrib
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Pathogenicity test of Colletotrichum falcatum on midrib

Pathogenicity test of Colletotrichum falcatum on midrib

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Stalk Isolates

Pathogenicity testing was conducted in a laboratory setting on stalk isolates such as KS-1 and JS-2 using the plug method on the sugarcane variety CoJ 85. Each stalk, inoculated with a 5 cm diameter piece from pure cultures of KS-1 and JS-2, was left at room temperature for 20 days before observations were made. The results showed significant differences: the KS-1 inoculated cane exhibited lesions covering two internodes with 100% spread, indicating susceptibility of CoJ 85 to KS-1. Meanwhile, JS-2 resulted in lesions covering nearly one internode with more than 50% spread, indicating an intermediate susceptibility of CoJ 85 to JS-2. These findings align with previous studies; Sandhu et al. (1974) [18] noted that stalk isolates tend to be more virulent than midrib isolates. Additionally, Shukla et al. (2001) [21] suggested that while midrib isolates currently pose no immediate threat to sugarcane cultivation, they could potentially adapt to local varieties and infect stalks under natural conditions.

Integrated disease management of Colletotrichum falcatum on sugarcane

A field experiment was conducted at the agriculture field of LPU campus in Punjab to assess integrated disease management strategies against Colletotrichum falcatum in sugarcane during 2022-2023. Sugarcane of the CoJ 85 variety, planted with twobudded setts, was subjected to seven different treatments in a randomized block design with three replications per treatment. Initial disease incidence data were recorded before the first spray application, timed upon the appearance of initial disease symptoms in the field. Subsequent data collections occurred 15 days post-spray and again 15 days prior to harvesting. The disease intensity observations for each treatment are detailed in Table 7. Before the initial spray, the least disease intensity (1.41%) was noted in the treatment involving sett application of Bavistin @ 0.25% combined with foliar spray of Bavistin @ 0.25%. Conversely, the highest disease intensity (8.11%) occurred in the treatment using C. falcatum spores on setts. Other effective treatments included sett applications with Trichoderma harzianum @ 10 g/kg plus foliar spray @ 10 g/l (5.01%), Trichoderma viride @ 10 g/kg plus foliar spray @ 10g/l (5.20%), C. falcatum spore suspension with Trichoderma harzianum @ 10g/kg (5.32%), and C. falcatum with Trichoderma viride @ 10g/kg (5.72%), while the control showed 5.85% disease intensity. After 15 days post-spray, the treatment with Bavistin @ 0.25% sett application plus foliar spray maintained the lowest disease intensity (2.19%). Following closely were treatments with Trichoderma harzianum @ 10g/kg plus foliar spray @ 10g/l (9.37%), C. falcatum with Trichoderma viride @ 10g/kg (9.40%), Trichoderma viride @ 10g/kg plus foliar spray @ 10g/l (10.43%), C. falcatum spore suspension with Trichoderma harzianum @ 10g/kg (11.28%), and the control with 13.48% disease intensity. The highest disease intensity (16.21%) was found in the treatment using C. falcatum spores on setts. Prior to harvesting, the treatment with Bavistin @ 0.25% sett application plus foliar spray showed the best disease management (9.32%). The highest disease intensity (29.89%) was observed in the treatment using C. falcatum spores on setts. Other effective treatments included Trichoderma viride @ 10 g/kg plus foliar spray @ 10g/l (15.84%), Trichoderma harzianum @ 10 g/kg plus foliar spray @ 10 g/l (16.88%), C. falcatum with Trichoderma viride @ 10 g/kg (18.12%), C. falcatum spore suspension with Trichoderma harzianum @ 10 g/kg (18.86%), and the control with 24.36% disease intensity. Bharadwaj and Sahu (2014) [7] reported complete inhibition of C. falcatum mycelial growth with Bavistin, underscoring its efficacy. Hence, among the treatments evaluated, Bavistin @ 0.25% sett application plus foliar spray emerged as the most effective, followed by treatments involving Trichoderma harzianum @ 10 g/kg plus foliar spray @ 10 g/l and Trichoderma viride @ 10 g/kg plus foliar spray @ 10 g/l. The application of T. harzianum and T. viride aids in red rot control by directly impacting C. falcatum and inducing systemic plant resistance (Yadav et al. 2008) [29] .

Table 7. Data of disease incidence during treatments
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Table 7
Data of disease incidence during treatments

Data of disease incidence during treatments

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Conclusion

Red rot, caused by Colletotrichum falcatum, poses a severe threat to global sugarcane production as it affects all parts of the plant-leaves, midribs, and stalks. A study was conducted to analyze the morphological, cultural, and pathogenic variability among midrib and stalk isolates of the red rot fungus. Significant differences were observed in mycelial growth among the three isolates, each displaying either raised fluffy or flat white mycelium with light orange pigmentation and medium to high levels of sporulation. Conidia were consistently falcate-shaped, averaging 28.3 µm x 6.75 µm in size. Pathogenicity tests using the pinprick and plug methods confirmed the effectiveness of both techniques in assessing disease severity on the sugarcane variety CoJ 85. Epidemiological studies conducted under natural conditions demonstrated a linear disease progression, highlighting the pivotal role of relative humidity in disease development. In managing red rot, a comparative evaluation of seven treatments revealed that applications containing Bavistin, T. harzianum, and T. viride were most effective. Beyond fungicides, the application of biocontrol agents has proven beneficial by directly impacting C. falcatum and inducing systemic resistance in sugarcane plants propagated from treated setts.

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Figure 6. Pathogenicity test of Colletotrichum falcatum on stalk
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Figure 6
Pathogenicity test of Colletotrichum falcatum on stalk

Pathogenicity test of Colletotrichum falcatum on stalk

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Table 6. Pathogenicity testing of stalk isolates under laboratory conditions
Stalk isolatesLesion lengthNodal transgression
KS-1100%++
JS-1> 50%+
Control< 25%-
++ - Both internodes, + - Only one internode, - - No internodes

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