articleTop 1% cited
Single-cell mRNA quantification and differential analysis with Census
Nature Methods · 2017 · Vol. 14(3) · pp. 309–315
Xiaojie Qiu✉(University of Washington)Andrew J. Hill(University of Washington)Jonathan S. Packer(University of Washington)Dejun Lin(University of Washington)Yi-An Ma(University of Washington Applied Physics Laboratory)Cole Trapnell(University of Washington)
Single-cell and spatial transcriptomicsRNA Research and SplicingAdvanced biosensing and bioanalysis techniquesBiologyCensusGene expressionComputational biologyGeneRNA splicingCellMessenger RNAAlternative splicingRNA-Seq
MeSH terms
AlgorithmsGene Expression RegulationRNASequence Analysis, RNAGene Expression ProfilingSingle-Cell AnalysisHigh-Throughput Nucleotide SequencingTranscriptome
Citations
2,084
FWCI
57.98
field-weighted impact
References
55
Percentile
100%
vs. same field & year
Citations per year
Cited by
PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
Genome biology · 2019 · 1,749 citations
The Mammalian Spermatogenesis Single-Cell Transcriptome, from Spermatogonial Stem Cells to Spermatids
Cell Reports · 2018 · 626 citations
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
BMC Genomics · 2018 · 3,215 citations
The Major Risk Factors for Alzheimer’s Disease: Age, Sex, and Genes Modulate the Microglia Response to Aβ Plaques
Cell Reports · 2019 · 950 citations
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
Genome biology · 2019 · 4,783 citations
Reversed graph embedding resolves complex single-cell trajectories
Nature Methods · 2017 · 5,149 citations
References
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
Nature Biotechnology · 2014 · 7,571 citations
Generalized Linear Models (2nd ed.).
Journal of the American Statistical Association · 1993 · 4,940 citations
Full-length RNA-seq from single cells using Smart-seq2
Nature Protocols · 2014 · 4,437 citations
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
Cell · 2015 · 7,706 citations
<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data
Bioinformatics · 2009 · 43,721 citations
Differential expression analysis for sequence count data
Genome biology · 2010 · 16,273 citations
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Genome biology · 2014 · 97,164 citations
MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data
Genome biology · 2015 · 3,474 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.