articleTop 1% cited

The MaxQuant computational platform for mass spectrometry-based shotgun proteomics

Nature Protocols · 2016 · Vol. 11(12) · pp. 2301–2319

Stefka Tyanova✉(Max Planck Institute of Biochemistry)Tikira Temu(Max Planck Institute of Biochemistry)Jüergen Cox(Max Planck Institute of Biochemistry)

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Advanced Proteomics Techniques and Applications Mass Spectrometry Techniques and Applications Metabolomics and Mass Spectrometry StudiesComputer scienceShotgun proteomicsWorkflowProteomicsProtocol (science)SoftwareQuantitative proteomicsMascotComputational biologyDatabase

MeSH terms

Protein Processing, Post-TranslationalSoftwareMass SpectrometryProteomics

Citations

5,108

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134.50

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References

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Ultradeep Human Phosphoproteome Reveals a Distinct Regulatory Nature of Tyr and Ser/Thr-Based Signaling

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A Statistical Model for Identifying Proteins by Tandem Mass Spectrometry

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MultiNotch MS3 Enables Accurate, Sensitive, and Multiplexed Detection of Differential Expression across Cancer Cell Line Proteomes

Analytical Chemistry · 2014 · 1,358 citations

Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

Analytical Chemistry · 2003 · 2,416 citations

More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC−MS/MS

Journal of Proteome Research · 2011 · 703 citations

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

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