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The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes

Journal of Molecular Biology · 2015 · Vol. 428(4) · pp. 720–725
Gydo C. P. van ZundertJoão RodriguesMikaël TrelletCarl SchmitzPanagiotis L. KastritisEzgi KaracaAdrien S. J. MelquiondMarc van DijkSjoerd J. de VriesAlexandre M. J. J. Bonvin

Abstract

The prediction of the quaternary structure of biomolecular macromolecules is of paramount importance for fundamental understanding of cellular processes and drug design. In the era of integrative structural biology, one way of increasing the accuracy of modeling methods used to predict the structure of biomolecular complexes is to include as much experimental or predictive information as possible in the process. This has been at the core of our information-driven docking approach HADDOCK. We present here the updated version 2.2 of the HADDOCK portal, which offers new features such as support for mixed molecule types, additional experimental restraints and improved protocols, all of this in a user-friendly interface. With well over 6000 registered users and 108,000 jobs served, an increasing fraction of which on grid resources, we hope that this timely upgrade will help the community to solve important biological questions and further advance the field. The HADDOCK2.2 Web server is freely accessible to non-profit users at http://haddock.science.uu.nl/services/HADDOCK2.2.

Protein Structure and DynamicsMicrobial Metabolic Engineering and BioproductionEnzyme Structure and FunctionComputer scienceHaddockUpgradeWeb serverWeb serviceWorkflowThe InternetWorld Wide WebDatabaseBiology

MeSH terms

Molecular BiologyComputational BiologyInternetMacromolecular Substances

Funding

  • American Society of Echocardiography
  • Ministerio de Sanidad, Servicios Sociales e Igualdad
  • Horizon 2020 Framework Programme
Citations
2,905
FWCI
37.81
field-weighted impact
References
25
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100%
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Citations per year
Cited by
Binding Affinity via Docking: Fact and Fiction
Molecules · 2018 · 686 citations
The HDOCK server for integrated protein–protein docking
Nature Protocols · 2020 · 1,728 citations
References
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