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IDBA-UD: a <i>de novo</i> assembler for single-cell and metagenomic sequencing data with highly uneven depth
Bioinformatics · 2012 · Vol. 28(11) · pp. 1420–1428
Yu Peng✉(University of Hong Kong)Henry C. M. Leung(University of Hong Kong)Siu‐Ming Yiu(University of Hong Kong)Francis Y. L. Chin(University of Hong Kong)
Abstract
The IDBA-UD toolkit is available at our website http://www.cs.hku.hk/~alse/idba_ud
Genomics and Phylogenetic StudiesMicrobial Community Ecology and PhysiologyProtist diversity and phylogenyContigMetagenomicsDe Bruijn graphSequence assemblyHybrid genome assemblyComputer scienceDNA sequencingk-merDeep sequencingGenome
MeSH terms
AlgorithmsBacteriaGenomeSequence Analysis, DNAMetagenomicsSingle-Cell AnalysisHigh-Throughput Nucleotide Sequencing
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References
ABySS: A parallel assembler for short read sequence data
Genome Research · 2009 · 3,741 citations
A Primer on Metagenomics
PLoS Computational Biology · 2010 · 695 citations
<tt>BLAT</tt>—The <tt>BLAST</tt>-Like Alignment Tool
Genome Research · 2002 · 8,404 citations
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Genome Research · 2008 · 9,674 citations
De novo assembly of human genomes with massively parallel short read sequencing
Genome Research · 2009 · 2,991 citations
BLAT---The BLAST-Like Alignment Tool
Genome Research · 2002 · 1,514 citations
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