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phangorn: phylogenetic analysis in R

Bioinformatics · 2010 · Vol. 27(4) · pp. 592–593
Klaus Schliep

Abstract

phangorn can be obtained through the CRAN homepage http://cran.r-project.org/web/packages/phangorn/index.html. phangorn is licensed under GPL 2.

Genomics and Phylogenetic StudiesEvolution and Paleontology StudiesGenetic diversity and population structurePhylogenetic treeMaximum parsimonyR packageMaximum likelihoodCharacter (mathematics)Computer scienceCongruence (geometry)BiologyAlgorithmStatistics

MeSH terms

Models, GeneticPhylogenySoftwareLikelihood FunctionsComputational Biology

Funding

  • Muséum National d'Histoire Naturelle
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References
Application of Phylogenetic Networks in Evolutionary Studies
Molecular Biology and Evolution · 2005 · 8,969 citations
Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference
Molecular Biology and Evolution · 1999 · 4,313 citations
jModelTest: Phylogenetic Model Averaging
Molecular Biology and Evolution · 2008 · 10,523 citations
APE: Analyses of Phylogenetics and Evolution in R language
Bioinformatics · 2004 · 12,504 citations
An Improved General Amino Acid Replacement Matrix
Molecular Biology and Evolution · 2008 · 3,248 citations
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