article Open AccessTop 1% cited
phangorn: phylogenetic analysis in R
Bioinformatics · 2010 · Vol. 27(4) · pp. 592–593
Klaus Schliep✉(Centre National de la Recherche Scientifique)
Abstract
phangorn can be obtained through the CRAN homepage http://cran.r-project.org/web/packages/phangorn/index.html. phangorn is licensed under GPL 2.
Genomics and Phylogenetic StudiesEvolution and Paleontology StudiesGenetic diversity and population structurePhylogenetic treeMaximum parsimonyR packageMaximum likelihoodCharacter (mathematics)Computer scienceCongruence (geometry)BiologyAlgorithmStatistics
MeSH terms
Models, GeneticPhylogenySoftwareLikelihood FunctionsComputational Biology
Funding
- Muséum National d'Histoire Naturelle
Citations
3,921
FWCI
11.63
field-weighted impact
References
18
Percentile
99%
vs. same field & year
Citations per year
Cited by
<i>adegenet 1.3-1</i> : new tools for the analysis of genome-wide SNP data
Bioinformatics · 2011 · 3,263 citations
SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data
BMC Genomics · 2014 · 628 citations
The fungal collaboration gradient dominates the root economics space in plants
Science Advances · 2020 · 881 citations
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
PLoS ONE · 2013 · 21,760 citations
References
Application of Phylogenetic Networks in Evolutionary Studies
Molecular Biology and Evolution · 2005 · 8,969 citations
A General Empirical Model of Protein Evolution Derived from Multiple Protein Families Using a Maximum-Likelihood Approach
Molecular Biology and Evolution · 2001 · 2,937 citations
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
Systematic Biology · 2003 · 16,911 citations
Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference
Molecular Biology and Evolution · 1999 · 4,313 citations
jModelTest: Phylogenetic Model Averaging
Molecular Biology and Evolution · 2008 · 10,523 citations
APE: Analyses of Phylogenetics and Evolution in R language
Bioinformatics · 2004 · 12,504 citations
An Improved General Amino Acid Replacement Matrix
Molecular Biology and Evolution · 2008 · 3,248 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.
