article Open AccessTop 1% cited
A fast, lock-free approach for efficient parallel counting of occurrences of <i>k</i> -mers
Bioinformatics · 2011 · Vol. 27(6) · pp. 764–770
Guillaume Marçais✉(University of Maryland, College Park)Carl Kingsford(University of Maryland, College Park)
Abstract
The Jellyfish software is written in C++ and is GPL licensed. It is available for download at http://www.cbcb.umd.edu/software/jellyfish.
Genomics and Phylogenetic StudiesAlgorithms and Data CompressionMachine Learning in BioinformaticsSubstringComputer sciencek-merParallel computingString (physics)SoftwareSuffix arrayLock (firearm)Hash tableHash function
MeSH terms
AlgorithmsAnimalsBase SequenceHumansSoftwareSequence AlignmentGenomeSequence Analysis, DNAComputational Biology
Funding
- National Science Foundation
- National Institutes of Health
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4,934
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References
MUSCLE: multiple sequence alignment with high accuracy and high throughput
Nucleic Acids Research · 2004 · 45,964 citations
MapReduce
Communications of the ACM · 2008 · 18,445 citations
Introduction to Algorithms
Journal of the Operational Research Society · 1991 · 16,946 citations
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