article Open AccessTop 1% cited
A protocol for generating a high-quality genome-scale metabolic reconstruction
Nature Protocols · 2010 · Vol. 5(1) · pp. 93–121
Ines Thiele✉(University of Iceland)Bernhard Ø. Palsson(University of California, San Diego)
Microbial Metabolic Engineering and BioproductionBioinformatics and Genomic NetworksBiofuel production and bioconversionMetabolic networkProtocol (science)Computer scienceComputational biologyScale (ratio)Systems biologyProcess (computing)GenomeQuality (philosophy)Metabolic engineering
MeSH terms
Computer SimulationGene Expression RegulationSoftwareGenomeBiomassGene Expression ProfilingMetabolome
Citations
1,850
FWCI
40.17
field-weighted impact
References
106
Percentile
100%
vs. same field & year
Citations per year
Cited by
The Role of Soil Microorganisms in Plant Mineral Nutrition—Current Knowledge and Future Directions
Frontiers in Plant Science · 2017 · 1,359 citations
What is flux balance analysis?
Nature Biotechnology · 2010 · 4,019 citations
Predicting Network Activity from High Throughput Metabolomics
PLoS Computational Biology · 2013 · 946 citations
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
Nature Protocols · 2011 · 1,906 citations
Mechanisms and consequences of intestinal dysbiosis
Cellular and Molecular Life Sciences · 2017 · 714 citations
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
Nature Protocols · 2019 · 1,324 citations
References
The RAST Server: Rapid Annotations using Subsystems Technology
BMC Genomics · 2008 · 11,666 citations
Mycobacterial cell wall: Structure and role in natural resistance to antibiotics
FEMS Microbiology Letters · 1994 · 579 citations
Theory for the Systemic Definition of Metabolic Pathways and their use in Interpreting Metabolic Function from a Pathway-Oriented Perspective
Journal of Theoretical Biology · 2000 · 660 citations
Locating proteins in the cell using TargetP, SignalP and related tools
Nature Protocols · 2007 · 3,218 citations
Database resources of the National Center for Biotechnology Information: update
Nucleic Acids Research · 2003 · 11,003 citations
Gene Ontology: tool for the unification of biology
Nature Genetics · 2000 · 43,975 citations
KEGG for linking genomes to life and the environment
Nucleic Acids Research · 2007 · 6,968 citations
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
Nature Protocols · 2011 · 1,906 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.
