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Reversible multiple time scale molecular dynamics

The Journal of Chemical Physics · 1992 · Vol. 97(3) · pp. 1990–2001
Mark E. TuckermanB. J. BerneGlenn Martyna

Abstract

The Trotter factorization of the Liouville propagator is used to generate new reversible molecular dynamics integrators. This strategy is applied to derive reversible reference system propagator algorithms (RESPA) that greatly accelerate simulations of systems with a separation of time scales or with long range forces. The new algorithms have all of the advantages of previous RESPA integrators but are reversible, and more stable than those methods. These methods are applied to a set of paradigmatic systems and are shown to be superior to earlier methods. It is shown how the new RESPA methods are related to predictor–corrector integrators. Finally, we show how these methods can be used to accelerate the integration of the equations of motion of systems with Nosé thermostats.

Protein Structure and DynamicsNumerical methods for differential equationsSpectroscopy and Quantum Chemical StudiesIntegratorPropagatorThermostatFactorizationSet (abstract data type)Range (aeronautics)Molecular dynamicsComputer scienceDynamics (music)Equations of motion

Funding

  • National Science Foundation
  • National Institutes of Health
Citations
3,560
FWCI
7.03
field-weighted impact
References
18
Percentile
98%
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References
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A unified formulation of the constant temperature molecular dynamics methods
The Journal of Chemical Physics · 1984 · 18,423 citations
Hybrid Monte Carlo
Physics Letters B · 1987 · 3,787 citations
Numerical Initial Value Problems in Ordinary Differential Equations
Mathematics of Computation · 1973 · 3,950 citations
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