article Open AccessTop 1% cited
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
BMC Bioinformatics · 2010 · Vol. 11(1) · pp. 395–395
Tomáš Pluskal✉(Okinawa Institute of Science and Technology Graduate University)Sandra Castillo(VTT Technical Research Centre of Finland)Alejandro Villar‐Briones(Okinawa Institute of Science and Technology Graduate University)Matej Orešič(VTT Technical Research Centre of Finland)
Abstract
MZmine 2 is freely available under a GNU GPL license and can be obtained from the project website at: http://mzmine.sourceforge.net/. The current version of MZmine 2 is suitable for processing large batches of data and has been applied to both targeted and non-targeted metabolomic analyses.
Metabolomics and Mass Spectrometry StudiesAdvanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and ApplicationsComputer scienceModular designMass spectrometryComputational biologyData scienceData miningChemistryBiologyChromatographyProgramming language
MeSH terms
AlgorithmsSoftwareSoftware DesignMass SpectrometryProteomics
Funding
- Okinawa Institute of Science and Technology Promotion Corporation
- Okinawa Institute of Science and Technology Graduate University
- FP7 Food, Agriculture and Fisheries, Biotechnology
Citations
3,878
FWCI
30.29
field-weighted impact
References
29
Percentile
100%
vs. same field & year
Citations per year
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