article Open AccessTop 10% cited
Gene finding in novel genomes
BMC Bioinformatics · 2004 · Vol. 5(1) · pp. 59–59
Ian Korf✉(Wellcome Sanger Institute)
Abstract
Since gene prediction is sensitive to species-specific parameters, every genome needs a dedicated gene finder.
Genomics and Phylogenetic StudiesGenetic diversity and population structureChromosomal and Genetic VariationsGenomeGeneComputational biologyGene predictionPhylogenetic treeDNA microarrayBiologyGeneticsComputer scienceGene expression
MeSH terms
AnimalsDrosophila melanogasterGenesPredictive Value of TestsSoftwareGenetic VariationGenomeCaenorhabditis elegansGenes, HelminthGenes, PlantGenes, InsectArabidopsisGenome, PlantComputational BiologyDatabases, Genetic
Funding
- Wellcome Trust
- National Institutes of Health
Citations
3,459
FWCI
7.57
field-weighted impact
References
20
Percentile
98%
vs. same field & year
Citations per year
Cited by
BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
Molecular Biology and Evolution · 2017 · 2,458 citations
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
BMC Bioinformatics · 2011 · 2,274 citations
Inside the root microbiome: Bacterial root endophytes and plant growth promotion
American Journal of Botany · 2013 · 638 citations
CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences
BMC Genomics · 2012 · 667 citations
A reference genome for Nicotiana tabacum enables map-based cloning of homeologous loci implicated in nitrogen utilization efficiency
BMC Genomics · 2017 · 419 citations
Corrigendum: Powdery Mildews Are Characterized by Contracted Carbohydrate Metabolism and Diverse Effectors to Adapt to Obligate Biotrophic Lifestyle
Frontiers in Microbiology · 2019 · 674 citations
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
Genome Research · 2008 · 1,105 citations
MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
Genome Research · 2007 · 2,130 citations
References
Basic local alignment search tool
Journal of Molecular Biology · 1990 · 93,570 citations
The Bioperl Toolkit: Perl Modules for the Life Sciences
Genome Research · 2002 · 1,698 citations
Prediction of complete gene structures in human genomic DNA
Journal of Molecular Biology · 1997 · 4,306 citations
Related articles
Finding the missing honey bee genes: lessons learned from a genome upgrade
BMC Genomics · 2014 · 452 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.
